Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1792

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1791 and DvMF_1792 are separated by 0 nucleotidesDvMF_1792 and DvMF_1793 are separated by 53 nucleotidesDvMF_1793 and DvMF_1794 are separated by 254 nucleotides DvMF_1791: DvMF_1791 - 2-isopropylmalate synthase (RefSeq), at 2,190,882 to 2,192,426 _1791 DvMF_1792: DvMF_1792 - 3-isopropylmalate dehydratase large subunit (RefSeq), at 2,192,427 to 2,193,683 _1792 DvMF_1793: DvMF_1793 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 2,193,737 to 2,194,228 _1793 DvMF_1794: DvMF_1794 - 3-isopropylmalate dehydrogenase (RefSeq), at 2,194,483 to 2,195,559 _1794 Position (kb) 2192 2193 2194Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2191.664 kb on - strand, within DvMF_1791at 2191.861 kb on - strand, within DvMF_1791at 2192.047 kb on + strand, within DvMF_1791at 2192.079 kb on + strand, within DvMF_1791at 2192.184 kb on + strand, within DvMF_1791at 2192.194 kb on - strand, within DvMF_1791at 2192.629 kb on - strand, within DvMF_1792at 2192.659 kb on + strand, within DvMF_1792at 2192.752 kb on + strand, within DvMF_1792at 2192.770 kb on - strand, within DvMF_1792at 2192.931 kb on + strand, within DvMF_1792at 2192.941 kb on - strand, within DvMF_1792at 2192.947 kb on + strand, within DvMF_1792at 2193.206 kb on + strand, within DvMF_1792at 2193.383 kb on + strand, within DvMF_1792at 2193.431 kb on + strand, within DvMF_1792at 2193.536 kb on + strand, within DvMF_1792at 2193.833 kb on - strand, within DvMF_1793at 2193.855 kb on + strand, within DvMF_1793at 2194.210 kb on - strandat 2194.247 kb on - strandat 2194.247 kb on - strandat 2194.399 kb on + strandat 2194.616 kb on - strand, within DvMF_1794

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,191,664 - DvMF_1791 0.51 -2.2
2,191,861 - DvMF_1791 0.63 -4.8
2,192,047 + DvMF_1791 0.75 -3.5
2,192,079 + DvMF_1791 0.77 -2.8
2,192,184 + DvMF_1791 0.84 -3.9
2,192,194 - DvMF_1791 0.85 -3.3
2,192,629 - DvMF_1792 0.16 -4.1
2,192,659 + DvMF_1792 0.18 -3.6
2,192,752 + DvMF_1792 0.26 -2.6
2,192,770 - DvMF_1792 0.27 -3.7
2,192,931 + DvMF_1792 0.40 -3.7
2,192,941 - DvMF_1792 0.41 -3.5
2,192,947 + DvMF_1792 0.41 -4.6
2,193,206 + DvMF_1792 0.62 -3.0
2,193,383 + DvMF_1792 0.76 -4.3
2,193,431 + DvMF_1792 0.80 -3.7
2,193,536 + DvMF_1792 0.88 -2.1
2,193,833 - DvMF_1793 0.20 -3.2
2,193,855 + DvMF_1793 0.24 -2.1
2,194,210 - -1.3
2,194,247 - -1.0
2,194,247 - -1.3
2,194,399 + -0.9
2,194,616 - DvMF_1794 0.12 -3.1

Or see this region's nucleotide sequence