Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1411

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1410 and DvMF_1411 are separated by 423 nucleotidesDvMF_1411 and DvMF_1412 overlap by 8 nucleotides DvMF_1410: DvMF_1410 - Shikimate kinase (RefSeq), at 1,723,871 to 1,724,404 _1410 DvMF_1411: DvMF_1411 - aminotransferase class I and II (RefSeq), at 1,724,828 to 1,726,012 _1411 DvMF_1412: DvMF_1412 - homoserine dehydrogenase (EC 1.1.1.3) (from data), at 1,726,005 to 1,727,315 _1412 Position (kb) 1724 1725 1726 1727Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1723.846 kb on + strandat 1724.418 kb on - strandat 1724.498 kb on + strandat 1724.589 kb on + strandat 1724.861 kb on + strandat 1724.892 kb on + strandat 1725.021 kb on - strand, within DvMF_1411at 1725.209 kb on + strand, within DvMF_1411at 1725.395 kb on + strand, within DvMF_1411at 1725.483 kb on + strand, within DvMF_1411at 1725.491 kb on - strand, within DvMF_1411at 1725.627 kb on - strand, within DvMF_1411at 1726.189 kb on + strand, within DvMF_1412at 1726.204 kb on + strand, within DvMF_1412at 1726.204 kb on + strand, within DvMF_1412at 1726.377 kb on - strand, within DvMF_1412at 1726.522 kb on + strand, within DvMF_1412at 1726.683 kb on + strand, within DvMF_1412at 1726.723 kb on - strand, within DvMF_1412at 1726.925 kb on - strand, within DvMF_1412at 1726.935 kb on - strand, within DvMF_1412

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,723,846 + +0.5
1,724,418 - -0.4
1,724,498 + -0.2
1,724,589 + -0.8
1,724,861 + -2.5
1,724,892 + -0.9
1,725,021 - DvMF_1411 0.16 +0.5
1,725,209 + DvMF_1411 0.32 -1.3
1,725,395 + DvMF_1411 0.48 -1.5
1,725,483 + DvMF_1411 0.55 -0.5
1,725,491 - DvMF_1411 0.56 -1.2
1,725,627 - DvMF_1411 0.67 -0.4
1,726,189 + DvMF_1412 0.14 -3.4
1,726,204 + DvMF_1412 0.15 -4.7
1,726,204 + DvMF_1412 0.15 -2.6
1,726,377 - DvMF_1412 0.28 -0.5
1,726,522 + DvMF_1412 0.39 -0.5
1,726,683 + DvMF_1412 0.52 -2.9
1,726,723 - DvMF_1412 0.55 +0.5
1,726,925 - DvMF_1412 0.70 -3.5
1,726,935 - DvMF_1412 0.71 -4.1

Or see this region's nucleotide sequence