Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0945

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0944 and DvMF_0945 are separated by 612 nucleotidesDvMF_0945 and DvMF_0946 are separated by 456 nucleotides DvMF_0944: DvMF_0944 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,144,454 to 1,145,299 _0944 DvMF_0945: DvMF_0945 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,145,912 to 1,146,946 _0945 DvMF_0946: DvMF_0946 - peptidase M48 Ste24p (RefSeq), at 1,147,403 to 1,148,260 _0946 Position (kb) 1145 1146 1147Strain fitness (log2 ratio) -2 -1 0 1 2at 1144.975 kb on + strand, within DvMF_0944at 1144.983 kb on - strand, within DvMF_0944at 1145.030 kb on - strand, within DvMF_0944at 1145.053 kb on + strand, within DvMF_0944at 1145.236 kb on - strandat 1145.274 kb on + strandat 1145.279 kb on + strandat 1145.383 kb on + strandat 1145.556 kb on + strandat 1145.647 kb on - strandat 1146.000 kb on + strandat 1146.024 kb on - strand, within DvMF_0945at 1146.130 kb on - strand, within DvMF_0945at 1146.303 kb on + strand, within DvMF_0945at 1146.311 kb on - strand, within DvMF_0945at 1146.492 kb on - strand, within DvMF_0945at 1146.606 kb on - strand, within DvMF_0945at 1146.747 kb on + strand, within DvMF_0945at 1146.752 kb on + strand, within DvMF_0945at 1146.752 kb on + strand, within DvMF_0945at 1146.752 kb on + strand, within DvMF_0945at 1146.752 kb on + strand, within DvMF_0945at 1146.755 kb on - strand, within DvMF_0945at 1146.760 kb on - strand, within DvMF_0945at 1146.760 kb on - strand, within DvMF_0945at 1146.776 kb on - strand, within DvMF_0945at 1147.175 kb on - strandat 1147.209 kb on + strandat 1147.209 kb on + strandat 1147.217 kb on - strandat 1147.247 kb on + strandat 1147.326 kb on + strandat 1147.422 kb on - strandat 1147.516 kb on - strand, within DvMF_0946at 1147.602 kb on + strand, within DvMF_0946at 1147.602 kb on + strand, within DvMF_0946at 1147.772 kb on + strand, within DvMF_0946

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,144,975 + DvMF_0944 0.62 -1.1
1,144,983 - DvMF_0944 0.63 -0.2
1,145,030 - DvMF_0944 0.68 -0.8
1,145,053 + DvMF_0944 0.71 -1.1
1,145,236 - -0.6
1,145,274 + -0.8
1,145,279 + -0.5
1,145,383 + -1.1
1,145,556 + +0.8
1,145,647 - -0.8
1,146,000 + +0.4
1,146,024 - DvMF_0945 0.11 -0.8
1,146,130 - DvMF_0945 0.21 -0.7
1,146,303 + DvMF_0945 0.38 -1.0
1,146,311 - DvMF_0945 0.39 -1.3
1,146,492 - DvMF_0945 0.56 -0.2
1,146,606 - DvMF_0945 0.67 -0.2
1,146,747 + DvMF_0945 0.81 -0.6
1,146,752 + DvMF_0945 0.81 -1.4
1,146,752 + DvMF_0945 0.81 -0.7
1,146,752 + DvMF_0945 0.81 -1.2
1,146,752 + DvMF_0945 0.81 -0.9
1,146,755 - DvMF_0945 0.81 -0.6
1,146,760 - DvMF_0945 0.82 +2.4
1,146,760 - DvMF_0945 0.82 -2.6
1,146,776 - DvMF_0945 0.83 +0.4
1,147,175 - -2.0
1,147,209 + +0.1
1,147,209 + -1.2
1,147,217 - -0.8
1,147,247 + -0.2
1,147,326 + -0.1
1,147,422 - +0.1
1,147,516 - DvMF_0946 0.13 -1.0
1,147,602 + DvMF_0946 0.23 -0.6
1,147,602 + DvMF_0946 0.23 -0.6
1,147,772 + DvMF_0946 0.43 +1.4

Or see this region's nucleotide sequence