Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0905 and DvMF_0906 are separated by 276 nucleotides DvMF_0906 and DvMF_0907 are separated by 223 nucleotides DvMF_0907 and DvMF_0908 are separated by 544 nucleotides
DvMF_0905: DvMF_0905 - hypothetical protein (RefSeq), at 1,089,115 to 1,089,660
_0905
DvMF_0906: DvMF_0906 - UspA domain protein (RefSeq), at 1,089,937 to 1,090,380
_0906
DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962
_0907
DvMF_0908: DvMF_0908 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) , at 1,092,507 to 1,093,670
_0908
Position (kb)
1090
1091
1092 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1090.299 kb on - strand, within DvMF_0906 at 1090.299 kb on - strand, within DvMF_0906 at 1090.397 kb on + strand at 1090.931 kb on - strand, within DvMF_0907 at 1090.931 kb on - strand, within DvMF_0907 at 1091.090 kb on - strand, within DvMF_0907 at 1091.236 kb on + strand, within DvMF_0907 at 1091.437 kb on + strand, within DvMF_0907 at 1091.451 kb on + strand, within DvMF_0907 at 1091.520 kb on - strand, within DvMF_0907 at 1091.662 kb on - strand, within DvMF_0907 at 1091.729 kb on - strand, within DvMF_0907 at 1092.095 kb on - strand at 1092.180 kb on + strand at 1092.285 kb on + strand at 1092.295 kb on + strand at 1092.303 kb on + strand at 1092.303 kb on - strand at 1092.563 kb on + strand at 1092.568 kb on + strand at 1092.571 kb on - strand at 1092.871 kb on - strand, within DvMF_0908 at 1092.874 kb on + strand, within DvMF_0908 at 1092.884 kb on + strand, within DvMF_0908
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,090,299 - DvMF_0906 0.82 -0.6 1,090,299 - DvMF_0906 0.82 -0.6 1,090,397 + -0.6 1,090,931 - DvMF_0907 0.24 -0.3 1,090,931 - DvMF_0907 0.24 -1.3 1,091,090 - DvMF_0907 0.36 -0.8 1,091,236 + DvMF_0907 0.47 -1.0 1,091,437 + DvMF_0907 0.61 +0.2 1,091,451 + DvMF_0907 0.62 -0.9 1,091,520 - DvMF_0907 0.67 -1.2 1,091,662 - DvMF_0907 0.78 -0.8 1,091,729 - DvMF_0907 0.83 -0.7 1,092,095 - -1.1 1,092,180 + -0.1 1,092,285 + -1.0 1,092,295 + -0.8 1,092,303 + -0.7 1,092,303 - +0.1 1,092,563 + -2.9 1,092,568 + -2.8 1,092,571 - -2.8 1,092,871 - DvMF_0908 0.31 -2.6 1,092,874 + DvMF_0908 0.32 -3.7 1,092,884 + DvMF_0908 0.32 -3.8
Or see this region's nucleotide sequence