Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0766

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0765 and DvMF_0766 are separated by 338 nucleotidesDvMF_0766 and DvMF_0767 are separated by 212 nucleotides DvMF_0765: DvMF_0765 - hypothetical protein (RefSeq), at 915,259 to 918,561 _0765 DvMF_0766: DvMF_0766 - 2-nitropropane dioxygenase NPD (RefSeq), at 918,900 to 920,021 _0766 DvMF_0767: DvMF_0767 - integrase family protein (RefSeq), at 920,234 to 921,349 _0767 Position (kb) 918 919 920 921Strain fitness (log2 ratio) -2 -1 0 1at 918.461 kb on - strandat 918.538 kb on + strandat 918.543 kb on + strandat 920.197 kb on - strandat 920.275 kb on - strandat 920.604 kb on + strand, within DvMF_0767at 920.981 kb on - strand, within DvMF_0767

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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918,461 - -1.1
918,538 + +1.5
918,543 + -2.7
920,197 - -0.4
920,275 - -0.9
920,604 + DvMF_0767 0.33 +0.5
920,981 - DvMF_0767 0.67 +0.0

Or see this region's nucleotide sequence