Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0516 and DvMF_0517 are separated by 28 nucleotides DvMF_0517 and DvMF_0518 are separated by 190 nucleotides
DvMF_0516: DvMF_0516 - aminotransferase class-III (RefSeq), at 609,138 to 610,517
_0516
DvMF_0517: DvMF_0517 - alanine dehydrogenase (RefSeq), at 610,546 to 611,655
_0517
DvMF_0518: DvMF_0518 - ABC transporter related (RefSeq), at 611,846 to 612,601
_0518
Position (kb) 610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.656 kb on - strand, within DvMF_0516 at 609.865 kb on - strand, within DvMF_0516 at 609.995 kb on + strand, within DvMF_0516 at 610.055 kb on + strand, within DvMF_0516 at 610.063 kb on - strand, within DvMF_0516 at 610.193 kb on + strand, within DvMF_0516 at 610.233 kb on - strand, within DvMF_0516 at 610.252 kb on + strand, within DvMF_0516 at 610.283 kb on - strand, within DvMF_0516 at 610.334 kb on + strand, within DvMF_0516 at 610.475 kb on + strand at 610.514 kb on - strand at 610.528 kb on - strand at 611.311 kb on - strand, within DvMF_0517 at 611.463 kb on + strand, within DvMF_0517 at 611.489 kb on - strand, within DvMF_0517 at 611.503 kb on + strand, within DvMF_0517 at 611.504 kb on - strand, within DvMF_0517 at 611.566 kb on + strand at 611.647 kb on + strand at 611.687 kb on - strand at 611.788 kb on + strand at 611.934 kb on + strand, within DvMF_0518 at 611.944 kb on + strand, within DvMF_0518 at 612.021 kb on - strand, within DvMF_0518 at 612.069 kb on + strand, within DvMF_0518 at 612.234 kb on + strand, within DvMF_0518 at 612.449 kb on + strand, within DvMF_0518 at 612.476 kb on - strand, within DvMF_0518
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 609,656 - DvMF_0516 0.38 -0.6 609,865 - DvMF_0516 0.53 +0.3 609,995 + DvMF_0516 0.62 -0.5 610,055 + DvMF_0516 0.66 +0.1 610,063 - DvMF_0516 0.67 -1.1 610,193 + DvMF_0516 0.76 -1.1 610,233 - DvMF_0516 0.79 -0.2 610,252 + DvMF_0516 0.81 +0.2 610,283 - DvMF_0516 0.83 +0.1 610,334 + DvMF_0516 0.87 -0.1 610,475 + -1.1 610,514 - -0.3 610,528 - -0.9 611,311 - DvMF_0517 0.69 -2.3 611,463 + DvMF_0517 0.83 -0.5 611,489 - DvMF_0517 0.85 -0.2 611,503 + DvMF_0517 0.86 -0.6 611,504 - DvMF_0517 0.86 -0.7 611,566 + +0.5 611,647 + +2.2 611,687 - -1.1 611,788 + -0.1 611,934 + DvMF_0518 0.12 -1.1 611,944 + DvMF_0518 0.13 +0.2 612,021 - DvMF_0518 0.23 -1.0 612,069 + DvMF_0518 0.29 -0.4 612,234 + DvMF_0518 0.51 -0.5 612,449 + DvMF_0518 0.80 -0.4 612,476 - DvMF_0518 0.83 -0.4
Or see this region's nucleotide sequence