Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2874 and Dshi_2875 are separated by 306 nucleotides Dshi_2875 and Dshi_2876 are separated by 366 nucleotides Dshi_2876 and Dshi_2877 are separated by 112 nucleotides
Dshi_2874: Dshi_2874 - Citrate (pro-3S)-lyase (RefSeq), at 3,028,080 to 3,028,967
_2874
Dshi_2875: Dshi_2875 - hypothetical protein (RefSeq), at 3,029,274 to 3,029,597
_2875
Dshi_2876: Dshi_2876 - malate dehydrogenase, NAD-dependent (RefSeq), at 3,029,964 to 3,030,926
_2876
Dshi_2877: Dshi_2877 - hypothetical protein (RefSeq), at 3,031,039 to 3,032,007
_2877
Position (kb)
3029
3030
3031 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3029.082 kb on - strand at 3029.159 kb on - strand at 3029.176 kb on - strand at 3029.218 kb on - strand at 3029.259 kb on + strand at 3029.271 kb on + strand at 3029.299 kb on + strand at 3029.299 kb on + strand at 3029.317 kb on - strand, within Dshi_2875 at 3029.363 kb on - strand, within Dshi_2875 at 3029.441 kb on + strand, within Dshi_2875 at 3029.452 kb on + strand, within Dshi_2875 at 3029.467 kb on + strand, within Dshi_2875 at 3029.495 kb on + strand, within Dshi_2875 at 3029.538 kb on + strand, within Dshi_2875 at 3029.641 kb on + strand at 3029.668 kb on - strand at 3029.707 kb on + strand at 3029.716 kb on - strand at 3029.782 kb on + strand at 3029.869 kb on + strand at 3030.410 kb on - strand, within Dshi_2876 at 3031.013 kb on - strand at 3031.015 kb on + strand at 3031.028 kb on + strand at 3031.036 kb on - strand at 3031.129 kb on - strand at 3031.157 kb on + strand, within Dshi_2877 at 3031.157 kb on + strand, within Dshi_2877 at 3031.157 kb on + strand, within Dshi_2877 at 3031.157 kb on + strand, within Dshi_2877 at 3031.165 kb on - strand, within Dshi_2877 at 3031.165 kb on - strand, within Dshi_2877 at 3031.165 kb on - strand, within Dshi_2877 at 3031.165 kb on - strand, within Dshi_2877 at 3031.165 kb on - strand, within Dshi_2877 at 3031.258 kb on - strand, within Dshi_2877 at 3031.271 kb on + strand, within Dshi_2877 at 3031.279 kb on - strand, within Dshi_2877 at 3031.319 kb on - strand, within Dshi_2877 at 3031.369 kb on + strand, within Dshi_2877 at 3031.451 kb on + strand, within Dshi_2877 at 3031.488 kb on + strand, within Dshi_2877 at 3031.502 kb on - strand, within Dshi_2877 at 3031.560 kb on + strand, within Dshi_2877 at 3031.560 kb on + strand, within Dshi_2877 at 3031.629 kb on - strand, within Dshi_2877 at 3031.631 kb on + strand, within Dshi_2877 at 3031.673 kb on + strand, within Dshi_2877 at 3031.681 kb on - strand, within Dshi_2877 at 3031.697 kb on + strand, within Dshi_2877 at 3031.717 kb on + strand, within Dshi_2877 at 3031.737 kb on + strand, within Dshi_2877 at 3031.742 kb on + strand, within Dshi_2877 at 3031.810 kb on + strand, within Dshi_2877 at 3031.810 kb on + strand, within Dshi_2877 at 3031.821 kb on + strand, within Dshi_2877 at 3031.821 kb on + strand, within Dshi_2877 at 3031.865 kb on - strand, within Dshi_2877 at 3031.873 kb on - strand, within Dshi_2877 at 3031.891 kb on - strand, within Dshi_2877 at 3031.892 kb on + strand, within Dshi_2877 at 3031.892 kb on + strand, within Dshi_2877 at 3031.902 kb on + strand, within Dshi_2877 at 3031.902 kb on + strand, within Dshi_2877 at 3031.902 kb on + strand, within Dshi_2877 at 3031.902 kb on + strand, within Dshi_2877 at 3031.910 kb on - strand, within Dshi_2877 at 3031.910 kb on - strand, within Dshi_2877 at 3031.910 kb on - strand, within Dshi_2877
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,029,082 - -0.5 3,029,159 - -0.6 3,029,176 - -1.1 3,029,218 - -0.3 3,029,259 + +0.2 3,029,271 + -0.2 3,029,299 + +0.5 3,029,299 + +0.3 3,029,317 - Dshi_2875 0.13 +0.7 3,029,363 - Dshi_2875 0.27 +0.9 3,029,441 + Dshi_2875 0.52 +0.5 3,029,452 + Dshi_2875 0.55 -0.1 3,029,467 + Dshi_2875 0.60 +0.1 3,029,495 + Dshi_2875 0.68 +1.0 3,029,538 + Dshi_2875 0.81 +0.4 3,029,641 + +0.4 3,029,668 - +0.5 3,029,707 + +0.6 3,029,716 - +0.3 3,029,782 + +1.1 3,029,869 + +0.5 3,030,410 - Dshi_2876 0.46 +2.8 3,031,013 - +0.2 3,031,015 + +0.5 3,031,028 + +0.4 3,031,036 - -1.0 3,031,129 - +0.8 3,031,157 + Dshi_2877 0.12 +0.6 3,031,157 + Dshi_2877 0.12 +0.0 3,031,157 + Dshi_2877 0.12 -0.7 3,031,157 + Dshi_2877 0.12 +0.5 3,031,165 - Dshi_2877 0.13 +0.1 3,031,165 - Dshi_2877 0.13 -0.0 3,031,165 - Dshi_2877 0.13 +1.1 3,031,165 - Dshi_2877 0.13 -0.3 3,031,165 - Dshi_2877 0.13 +0.7 3,031,258 - Dshi_2877 0.23 +0.2 3,031,271 + Dshi_2877 0.24 -0.5 3,031,279 - Dshi_2877 0.25 -0.0 3,031,319 - Dshi_2877 0.29 +2.1 3,031,369 + Dshi_2877 0.34 +0.5 3,031,451 + Dshi_2877 0.43 -1.2 3,031,488 + Dshi_2877 0.46 +0.8 3,031,502 - Dshi_2877 0.48 +0.5 3,031,560 + Dshi_2877 0.54 +0.9 3,031,560 + Dshi_2877 0.54 -0.4 3,031,629 - Dshi_2877 0.61 +0.6 3,031,631 + Dshi_2877 0.61 +0.9 3,031,673 + Dshi_2877 0.65 +0.2 3,031,681 - Dshi_2877 0.66 +2.1 3,031,697 + Dshi_2877 0.68 -1.1 3,031,717 + Dshi_2877 0.70 -0.7 3,031,737 + Dshi_2877 0.72 -0.4 3,031,742 + Dshi_2877 0.73 -0.1 3,031,810 + Dshi_2877 0.80 -0.1 3,031,810 + Dshi_2877 0.80 +0.2 3,031,821 + Dshi_2877 0.81 +0.2 3,031,821 + Dshi_2877 0.81 -0.1 3,031,865 - Dshi_2877 0.85 +0.4 3,031,873 - Dshi_2877 0.86 +0.2 3,031,891 - Dshi_2877 0.88 +0.2 3,031,892 + Dshi_2877 0.88 +0.0 3,031,892 + Dshi_2877 0.88 -0.3 3,031,902 + Dshi_2877 0.89 -0.2 3,031,902 + Dshi_2877 0.89 -0.1 3,031,902 + Dshi_2877 0.89 -1.0 3,031,902 + Dshi_2877 0.89 -0.6 3,031,910 - Dshi_2877 0.90 -0.7 3,031,910 - Dshi_2877 0.90 +0.3 3,031,910 - Dshi_2877 0.90 +0.8
Or see this region's nucleotide sequence