Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2010

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2009 and Dshi_2010 are separated by 62 nucleotidesDshi_2010 and Dshi_2011 overlap by 4 nucleotidesDshi_2011 and Dshi_2012 overlap by 1 nucleotides Dshi_2009: Dshi_2009 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 2,128,649 to 2,129,623 _2009 Dshi_2010: Dshi_2010 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 2,129,686 to 2,130,483 _2010 Dshi_2011: Dshi_2011 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,130,480 to 2,131,292 _2011 Dshi_2012: Dshi_2012 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,131,292 to 2,132,107 _2012 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -1 0 1 2 3 4at 2128.703 kb on - strandat 2128.847 kb on + strand, within Dshi_2009at 2129.049 kb on - strand, within Dshi_2009at 2129.148 kb on - strand, within Dshi_2009at 2129.394 kb on - strand, within Dshi_2009at 2129.449 kb on + strand, within Dshi_2009at 2129.561 kb on - strandat 2129.873 kb on + strand, within Dshi_2010at 2130.025 kb on + strand, within Dshi_2010at 2130.081 kb on + strand, within Dshi_2010at 2130.089 kb on - strand, within Dshi_2010at 2130.199 kb on - strand, within Dshi_2010at 2130.214 kb on - strand, within Dshi_2010at 2130.224 kb on - strand, within Dshi_2010at 2130.337 kb on + strand, within Dshi_2010at 2130.358 kb on + strand, within Dshi_2010at 2130.499 kb on - strandat 2130.666 kb on + strand, within Dshi_2011at 2130.753 kb on + strand, within Dshi_2011at 2130.802 kb on + strand, within Dshi_2011at 2131.059 kb on + strand, within Dshi_2011at 2131.097 kb on - strand, within Dshi_2011at 2131.178 kb on - strand, within Dshi_2011at 2131.308 kb on + strandat 2131.413 kb on + strand, within Dshi_2012

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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2,128,703 - +3.9
2,128,847 + Dshi_2009 0.20 +4.4
2,129,049 - Dshi_2009 0.41 +4.0
2,129,148 - Dshi_2009 0.51 +4.5
2,129,394 - Dshi_2009 0.76 +3.7
2,129,449 + Dshi_2009 0.82 +4.2
2,129,561 - +4.1
2,129,873 + Dshi_2010 0.23 +3.8
2,130,025 + Dshi_2010 0.42 +3.9
2,130,081 + Dshi_2010 0.49 +3.3
2,130,089 - Dshi_2010 0.51 +3.9
2,130,199 - Dshi_2010 0.64 +4.6
2,130,214 - Dshi_2010 0.66 +4.2
2,130,224 - Dshi_2010 0.67 +3.1
2,130,337 + Dshi_2010 0.82 +4.0
2,130,358 + Dshi_2010 0.84 +4.0
2,130,499 - +1.1
2,130,666 + Dshi_2011 0.23 +4.0
2,130,753 + Dshi_2011 0.34 +3.5
2,130,802 + Dshi_2011 0.40 +4.3
2,131,059 + Dshi_2011 0.71 +3.7
2,131,097 - Dshi_2011 0.76 +3.9
2,131,178 - Dshi_2011 0.86 +3.7
2,131,308 + +3.7
2,131,413 + Dshi_2012 0.15 +3.8

Or see this region's nucleotide sequence