Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1557 and Dshi_1558 overlap by 34 nucleotides Dshi_1558 and Dshi_1559 are separated by 115 nucleotides Dshi_1559 and Dshi_1560 are separated by 137 nucleotides Dshi_1560 and Dshi_1561 are separated by 132 nucleotides
Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090
_1557
Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377
_1558
Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701
_1559
Dshi_1560: Dshi_1560 - hypothetical protein (RefSeq), at 1,621,839 to 1,622,270
_1560
Dshi_1561: Dshi_1561 - transcription-repair coupling factor (RefSeq), at 1,622,403 to 1,625,885
_1561
Position (kb)
1620
1621
1622 Strain fitness (log2 ratio)
-2
-1
0
1 at 1619.692 kb on + strand, within Dshi_1557 at 1619.752 kb on - strand, within Dshi_1557 at 1620.354 kb on + strand at 1620.374 kb on + strand at 1620.505 kb on + strand at 1620.651 kb on - strand, within Dshi_1559 at 1620.768 kb on + strand, within Dshi_1559 at 1620.843 kb on + strand, within Dshi_1559 at 1620.878 kb on - strand, within Dshi_1559 at 1620.878 kb on - strand, within Dshi_1559 at 1621.143 kb on - strand, within Dshi_1559 at 1621.638 kb on - strand at 1621.646 kb on - strand at 1621.824 kb on + strand at 1622.044 kb on + strand, within Dshi_1560 at 1622.106 kb on + strand, within Dshi_1560 at 1622.358 kb on + strand at 1622.467 kb on + strand at 1622.649 kb on - strand at 1622.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,619,692 + Dshi_1557 0.40 -1.8 1,619,752 - Dshi_1557 0.49 +0.1 1,620,354 + +0.6 1,620,374 + -0.7 1,620,505 + -0.6 1,620,651 - Dshi_1559 0.13 -0.8 1,620,768 + Dshi_1559 0.23 -0.5 1,620,843 + Dshi_1559 0.29 +0.3 1,620,878 - Dshi_1559 0.32 -0.0 1,620,878 - Dshi_1559 0.32 -0.1 1,621,143 - Dshi_1559 0.54 -0.3 1,621,638 - -0.5 1,621,646 - -1.0 1,621,824 + -0.5 1,622,044 + Dshi_1560 0.47 +0.2 1,622,106 + Dshi_1560 0.62 -0.4 1,622,358 + +1.0 1,622,467 + -1.1 1,622,649 - -0.1 1,622,670 - -1.1
Or see this region's nucleotide sequence