Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0459

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0457 and Dshi_0458 overlap by 4 nucleotidesDshi_0458 and Dshi_0459 overlap by 8 nucleotidesDshi_0459 and Dshi_0460 overlap by 4 nucleotidesDshi_0460 and Dshi_0461 overlap by 4 nucleotides Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900 _0457 Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268 _0458 Dshi_0459: Dshi_0459 - von Willebrand factor type A (RefSeq), at 445,261 to 446,223 _0459 Dshi_0460: Dshi_0460 - hypothetical protein (RefSeq), at 446,220 to 447,119 _0460 Dshi_0461: Dshi_0461 - hypothetical protein (RefSeq), at 447,116 to 447,790 _0461 Position (kb) 445 446 447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 444.291 kb on + strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.294 kb on - strand, within Dshi_0457at 444.299 kb on - strand, within Dshi_0457at 444.372 kb on - strand, within Dshi_0457at 444.389 kb on - strand, within Dshi_0457at 444.420 kb on - strand, within Dshi_0457at 444.526 kb on - strand, within Dshi_0457at 444.541 kb on + strand, within Dshi_0457at 444.559 kb on + strand, within Dshi_0457at 444.688 kb on - strand, within Dshi_0457at 444.712 kb on - strand, within Dshi_0457at 444.801 kb on - strand, within Dshi_0457at 444.864 kb on - strandat 444.886 kb on - strandat 444.946 kb on + strand, within Dshi_0458at 444.977 kb on + strand, within Dshi_0458at 444.982 kb on + strand, within Dshi_0458at 444.992 kb on + strand, within Dshi_0458at 445.092 kb on + strand, within Dshi_0458at 445.102 kb on - strand, within Dshi_0458at 445.107 kb on - strand, within Dshi_0458at 445.173 kb on + strand, within Dshi_0458at 445.178 kb on + strand, within Dshi_0458at 445.181 kb on - strand, within Dshi_0458at 445.183 kb on + strand, within Dshi_0458at 445.191 kb on - strand, within Dshi_0458at 445.191 kb on - strand, within Dshi_0458at 445.191 kb on - strand, within Dshi_0458at 445.205 kb on + strand, within Dshi_0458at 445.208 kb on - strand, within Dshi_0458at 445.213 kb on - strand, within Dshi_0458at 445.219 kb on - strand, within Dshi_0458at 445.288 kb on - strandat 445.293 kb on + strandat 445.313 kb on - strandat 445.360 kb on - strand, within Dshi_0459at 445.371 kb on - strand, within Dshi_0459at 445.384 kb on + strand, within Dshi_0459at 445.385 kb on + strand, within Dshi_0459at 445.422 kb on + strand, within Dshi_0459at 445.611 kb on + strand, within Dshi_0459at 445.628 kb on - strand, within Dshi_0459at 445.629 kb on - strand, within Dshi_0459at 445.657 kb on + strand, within Dshi_0459at 445.665 kb on - strand, within Dshi_0459at 445.667 kb on + strand, within Dshi_0459at 445.706 kb on - strand, within Dshi_0459at 445.775 kb on - strand, within Dshi_0459at 445.799 kb on + strand, within Dshi_0459at 445.799 kb on + strand, within Dshi_0459at 445.799 kb on + strand, within Dshi_0459at 445.805 kb on + strand, within Dshi_0459at 445.807 kb on - strand, within Dshi_0459at 445.807 kb on - strand, within Dshi_0459at 445.830 kb on - strand, within Dshi_0459at 445.832 kb on + strand, within Dshi_0459at 445.840 kb on - strand, within Dshi_0459at 445.868 kb on - strand, within Dshi_0459at 445.904 kb on - strand, within Dshi_0459at 445.952 kb on + strand, within Dshi_0459at 445.974 kb on - strand, within Dshi_0459at 445.974 kb on - strand, within Dshi_0459at 445.984 kb on - strand, within Dshi_0459at 446.015 kb on + strand, within Dshi_0459at 446.024 kb on - strand, within Dshi_0459at 446.029 kb on + strand, within Dshi_0459at 446.042 kb on - strand, within Dshi_0459at 446.096 kb on + strand, within Dshi_0459at 446.123 kb on + strand, within Dshi_0459at 446.142 kb on + strandat 446.142 kb on + strandat 446.160 kb on + strandat 446.168 kb on - strandat 446.207 kb on + strandat 446.207 kb on + strandat 446.293 kb on + strandat 446.343 kb on - strand, within Dshi_0460at 446.372 kb on + strand, within Dshi_0460at 446.396 kb on - strand, within Dshi_0460at 446.536 kb on + strand, within Dshi_0460at 446.632 kb on - strand, within Dshi_0460at 446.672 kb on + strand, within Dshi_0460at 446.688 kb on + strand, within Dshi_0460at 446.689 kb on + strand, within Dshi_0460at 446.690 kb on - strand, within Dshi_0460at 446.696 kb on - strand, within Dshi_0460at 446.697 kb on + strand, within Dshi_0460at 446.707 kb on - strand, within Dshi_0460at 446.712 kb on - strand, within Dshi_0460at 446.723 kb on - strand, within Dshi_0460at 446.750 kb on + strand, within Dshi_0460at 446.758 kb on - strand, within Dshi_0460at 446.773 kb on - strand, within Dshi_0460at 446.791 kb on + strand, within Dshi_0460at 446.826 kb on - strand, within Dshi_0460at 446.831 kb on - strand, within Dshi_0460at 446.870 kb on + strand, within Dshi_0460at 446.873 kb on - strand, within Dshi_0460at 446.892 kb on + strand, within Dshi_0460at 446.937 kb on + strand, within Dshi_0460at 446.949 kb on + strand, within Dshi_0460at 447.071 kb on - strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.122 kb on - strandat 447.135 kb on - strandat 447.142 kb on + strandat 447.159 kb on - strandat 447.166 kb on + strandat 447.190 kb on - strand, within Dshi_0461at 447.214 kb on + strand, within Dshi_0461

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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444,291 + Dshi_0457 0.33 +0.4
444,294 - Dshi_0457 0.33 -0.1
444,294 - Dshi_0457 0.33 -0.5
444,294 - Dshi_0457 0.33 +0.6
444,294 - Dshi_0457 0.33 -0.2
444,299 - Dshi_0457 0.34 +0.6
444,372 - Dshi_0457 0.42 -1.2
444,389 - Dshi_0457 0.44 -0.2
444,420 - Dshi_0457 0.47 -0.5
444,526 - Dshi_0457 0.59 -0.7
444,541 + Dshi_0457 0.60 -0.1
444,559 + Dshi_0457 0.62 +0.8
444,688 - Dshi_0457 0.77 -0.2
444,712 - Dshi_0457 0.79 +0.7
444,801 - Dshi_0457 0.89 +0.3
444,864 - +1.4
444,886 - -0.3
444,946 + Dshi_0458 0.13 +0.2
444,977 + Dshi_0458 0.22 +0.8
444,982 + Dshi_0458 0.23 -0.5
444,992 + Dshi_0458 0.26 +0.1
445,092 + Dshi_0458 0.52 -0.4
445,102 - Dshi_0458 0.55 -0.2
445,107 - Dshi_0458 0.56 +0.4
445,173 + Dshi_0458 0.74 +0.4
445,178 + Dshi_0458 0.76 +0.2
445,181 - Dshi_0458 0.76 -0.7
445,183 + Dshi_0458 0.77 -0.6
445,191 - Dshi_0458 0.79 -0.9
445,191 - Dshi_0458 0.79 +0.4
445,191 - Dshi_0458 0.79 -0.1
445,205 + Dshi_0458 0.83 +0.4
445,208 - Dshi_0458 0.84 -0.2
445,213 - Dshi_0458 0.85 -0.3
445,219 - Dshi_0458 0.87 -0.4
445,288 - -1.2
445,293 + -0.0
445,313 - +0.3
445,360 - Dshi_0459 0.10 +0.4
445,371 - Dshi_0459 0.11 -0.1
445,384 + Dshi_0459 0.13 +0.7
445,385 + Dshi_0459 0.13 -0.7
445,422 + Dshi_0459 0.17 -1.1
445,611 + Dshi_0459 0.36 -0.1
445,628 - Dshi_0459 0.38 +0.2
445,629 - Dshi_0459 0.38 -0.9
445,657 + Dshi_0459 0.41 -0.4
445,665 - Dshi_0459 0.42 -0.5
445,667 + Dshi_0459 0.42 +0.4
445,706 - Dshi_0459 0.46 +0.7
445,775 - Dshi_0459 0.53 +0.4
445,799 + Dshi_0459 0.56 +0.8
445,799 + Dshi_0459 0.56 +0.1
445,799 + Dshi_0459 0.56 -1.1
445,805 + Dshi_0459 0.56 +0.9
445,807 - Dshi_0459 0.57 +0.5
445,807 - Dshi_0459 0.57 +0.8
445,830 - Dshi_0459 0.59 -0.3
445,832 + Dshi_0459 0.59 +0.0
445,840 - Dshi_0459 0.60 +0.9
445,868 - Dshi_0459 0.63 +0.7
445,904 - Dshi_0459 0.67 -0.2
445,952 + Dshi_0459 0.72 -3.2
445,974 - Dshi_0459 0.74 -0.3
445,974 - Dshi_0459 0.74 +1.0
445,984 - Dshi_0459 0.75 +0.4
446,015 + Dshi_0459 0.78 +0.7
446,024 - Dshi_0459 0.79 +0.2
446,029 + Dshi_0459 0.80 +0.4
446,042 - Dshi_0459 0.81 -0.8
446,096 + Dshi_0459 0.87 +0.1
446,123 + Dshi_0459 0.90 +0.4
446,142 + -0.7
446,142 + -1.1
446,160 + +0.6
446,168 - -0.7
446,207 + -0.3
446,207 + +0.4
446,293 + -1.0
446,343 - Dshi_0460 0.14 -0.4
446,372 + Dshi_0460 0.17 -0.0
446,396 - Dshi_0460 0.20 +0.3
446,536 + Dshi_0460 0.35 -0.5
446,632 - Dshi_0460 0.46 -0.9
446,672 + Dshi_0460 0.50 -0.1
446,688 + Dshi_0460 0.52 -0.4
446,689 + Dshi_0460 0.52 +0.9
446,690 - Dshi_0460 0.52 -0.2
446,696 - Dshi_0460 0.53 -0.5
446,697 + Dshi_0460 0.53 +0.5
446,707 - Dshi_0460 0.54 -0.3
446,712 - Dshi_0460 0.55 +0.3
446,723 - Dshi_0460 0.56 -0.7
446,750 + Dshi_0460 0.59 -0.8
446,758 - Dshi_0460 0.60 -0.3
446,773 - Dshi_0460 0.61 +0.8
446,791 + Dshi_0460 0.63 +0.7
446,826 - Dshi_0460 0.67 -0.5
446,831 - Dshi_0460 0.68 +1.2
446,870 + Dshi_0460 0.72 +0.0
446,873 - Dshi_0460 0.73 +0.7
446,892 + Dshi_0460 0.75 +0.2
446,937 + Dshi_0460 0.80 -1.4
446,949 + Dshi_0460 0.81 -0.6
447,071 - -0.7
447,114 + -0.5
447,114 + -0.5
447,114 + -1.3
447,122 - -0.3
447,135 - -0.7
447,142 + -0.7
447,159 - +0.4
447,166 + +0.6
447,190 - Dshi_0461 0.11 -0.9
447,214 + Dshi_0461 0.15 +2.0

Or see this region's nucleotide sequence