Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0523

Experiment: BHIS with Thioridazine 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0521 and BT0522 overlap by 19 nucleotidesBT0522 and BT0523 are separated by 15 nucleotidesBT0523 and BT0524 are separated by 12 nucleotidesBT0524 and BT0525 are separated by 241 nucleotides BT0521: BT0521 - putative acetyl transferase (NCBI ptt file), at 643,713 to 644,336 BT0521 BT0522: BT0522 - hypothetical protein (NCBI ptt file), at 644,318 to 645,232 BT0522 BT0523: BT0523 - putative glycosyltransferase (NCBI ptt file), at 645,248 to 646,408 BT0523 BT0524: BT0524 - putative two-component system response regulator (NCBI ptt file), at 646,421 to 646,786 BT0524 BT0525: BT0525 - outer membrane protein, function unknown (NCBI ptt file), at 647,028 to 649,490 BT0525 Position (kb) 645 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 644.510 kb on + strand, within BT0522at 644.556 kb on - strand, within BT0522at 644.570 kb on + strand, within BT0522at 644.571 kb on + strand, within BT0522at 644.611 kb on - strand, within BT0522at 644.634 kb on - strand, within BT0522at 644.634 kb on - strand, within BT0522at 644.659 kb on + strand, within BT0522at 644.660 kb on - strand, within BT0522at 644.660 kb on - strand, within BT0522at 644.661 kb on + strand, within BT0522at 644.666 kb on - strand, within BT0522at 644.810 kb on - strand, within BT0522at 644.863 kb on + strand, within BT0522at 644.864 kb on - strand, within BT0522at 644.877 kb on - strand, within BT0522at 644.905 kb on - strand, within BT0522at 644.973 kb on - strand, within BT0522at 644.973 kb on - strand, within BT0522at 644.994 kb on - strand, within BT0522at 645.054 kb on + strand, within BT0522at 645.056 kb on + strand, within BT0522at 645.086 kb on + strand, within BT0522at 645.086 kb on + strand, within BT0522at 645.086 kb on + strand, within BT0522at 645.212 kb on + strandat 645.213 kb on - strandat 645.217 kb on - strandat 645.217 kb on - strandat 645.220 kb on + strandat 645.277 kb on + strandat 645.498 kb on - strand, within BT0523at 645.500 kb on - strand, within BT0523at 645.506 kb on - strand, within BT0523at 645.506 kb on - strand, within BT0523at 645.552 kb on + strand, within BT0523at 645.553 kb on - strand, within BT0523at 645.734 kb on + strand, within BT0523at 645.735 kb on - strand, within BT0523at 645.813 kb on + strand, within BT0523at 645.860 kb on + strand, within BT0523at 645.913 kb on + strand, within BT0523at 645.947 kb on + strand, within BT0523at 645.948 kb on - strand, within BT0523at 645.953 kb on + strand, within BT0523at 646.112 kb on - strand, within BT0523at 646.112 kb on - strand, within BT0523at 646.120 kb on + strand, within BT0523at 646.123 kb on + strand, within BT0523at 646.148 kb on - strand, within BT0523at 646.160 kb on - strand, within BT0523at 646.163 kb on - strand, within BT0523at 646.178 kb on + strand, within BT0523at 646.178 kb on + strand, within BT0523at 646.179 kb on - strand, within BT0523at 646.187 kb on - strand, within BT0523at 646.287 kb on - strand, within BT0523at 646.303 kb on + strandat 646.332 kb on + strandat 646.333 kb on - strandat 646.367 kb on + strandat 646.393 kb on - strandat 646.393 kb on - strandat 646.526 kb on - strand, within BT0524at 646.588 kb on - strand, within BT0524at 646.621 kb on + strand, within BT0524at 646.654 kb on + strand, within BT0524at 646.655 kb on - strand, within BT0524at 646.655 kb on - strand, within BT0524at 646.674 kb on - strand, within BT0524at 646.702 kb on + strand, within BT0524at 646.702 kb on + strand, within BT0524at 646.711 kb on - strand, within BT0524at 646.726 kb on - strand, within BT0524at 646.726 kb on - strand, within BT0524at 646.728 kb on - strand, within BT0524at 646.729 kb on + strand, within BT0524at 646.729 kb on + strand, within BT0524at 646.730 kb on - strand, within BT0524at 646.827 kb on + strandat 646.828 kb on - strandat 646.837 kb on - strandat 646.956 kb on + strandat 646.956 kb on + strandat 646.956 kb on + strandat 647.037 kb on - strandat 647.150 kb on - strandat 647.214 kb on - strandat 647.307 kb on + strand, within BT0525at 647.308 kb on - strand, within BT0525at 647.338 kb on - strand, within BT0525at 647.385 kb on + strand, within BT0525at 647.385 kb on + strand, within BT0525

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Thioridazine 0.0125 mM
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644,510 + BT0522 0.21 -1.8
644,556 - BT0522 0.26 -1.5
644,570 + BT0522 0.28 -1.6
644,571 + BT0522 0.28 -0.1
644,611 - BT0522 0.32 -0.0
644,634 - BT0522 0.35 +2.0
644,634 - BT0522 0.35 +1.0
644,659 + BT0522 0.37 -1.3
644,660 - BT0522 0.37 -0.5
644,660 - BT0522 0.37 -0.3
644,661 + BT0522 0.37 -1.6
644,666 - BT0522 0.38 -0.0
644,810 - BT0522 0.54 -1.6
644,863 + BT0522 0.60 -0.0
644,864 - BT0522 0.60 +2.6
644,877 - BT0522 0.61 -0.7
644,905 - BT0522 0.64 +1.0
644,973 - BT0522 0.72 +1.6
644,973 - BT0522 0.72 +1.1
644,994 - BT0522 0.74 -1.8
645,054 + BT0522 0.80 -1.2
645,056 + BT0522 0.81 +1.0
645,086 + BT0522 0.84 -0.6
645,086 + BT0522 0.84 -0.6
645,086 + BT0522 0.84 -0.0
645,212 + -2.0
645,213 - -1.4
645,217 - -1.3
645,217 - -1.0
645,220 + -2.4
645,277 + -0.6
645,498 - BT0523 0.22 -1.0
645,500 - BT0523 0.22 -1.7
645,506 - BT0523 0.22 -1.9
645,506 - BT0523 0.22 -2.5
645,552 + BT0523 0.26 +1.0
645,553 - BT0523 0.26 -1.6
645,734 + BT0523 0.42 -0.6
645,735 - BT0523 0.42 +0.6
645,813 + BT0523 0.49 -1.0
645,860 + BT0523 0.53 -1.3
645,913 + BT0523 0.57 -0.0
645,947 + BT0523 0.60 -1.2
645,948 - BT0523 0.60 -1.0
645,953 + BT0523 0.61 -0.0
646,112 - BT0523 0.74 -0.6
646,112 - BT0523 0.74 -0.6
646,120 + BT0523 0.75 -0.0
646,123 + BT0523 0.75 -0.6
646,148 - BT0523 0.78 -2.5
646,160 - BT0523 0.79 -1.0
646,163 - BT0523 0.79 -3.5
646,178 + BT0523 0.80 -0.9
646,178 + BT0523 0.80 +3.8
646,179 - BT0523 0.80 -1.6
646,187 - BT0523 0.81 -0.6
646,287 - BT0523 0.89 -2.2
646,303 + +1.0
646,332 + -0.2
646,333 - -1.4
646,367 + -1.6
646,393 - -2.3
646,393 - -0.8
646,526 - BT0524 0.29 -1.0
646,588 - BT0524 0.46 -1.3
646,621 + BT0524 0.55 -0.0
646,654 + BT0524 0.64 -0.9
646,655 - BT0524 0.64 -2.6
646,655 - BT0524 0.64 -1.9
646,674 - BT0524 0.69 -1.0
646,702 + BT0524 0.77 -0.5
646,702 + BT0524 0.77 -0.5
646,711 - BT0524 0.79 -1.1
646,726 - BT0524 0.83 -0.0
646,726 - BT0524 0.83 -0.0
646,728 - BT0524 0.84 -2.2
646,729 + BT0524 0.84 -1.3
646,729 + BT0524 0.84 -0.6
646,730 - BT0524 0.84 -3.3
646,827 + -0.6
646,828 - +0.4
646,837 - -0.9
646,956 + +0.3
646,956 + -1.4
646,956 + +1.0
647,037 - -0.0
647,150 - -1.5
647,214 - +1.0
647,307 + BT0525 0.11 -0.6
647,308 - BT0525 0.11 -2.7
647,338 - BT0525 0.13 +2.6
647,385 + BT0525 0.14 -0.6
647,385 + BT0525 0.14 -1.0

Or see this region's nucleotide sequence