Strain Fitness in Sinorhizobium meliloti 1021 around SMc04125

Experiment: Day4 LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04126 and SMc04125 are separated by 4 nucleotidesSMc04125 and SMc04124 are separated by 3 nucleotidesSMc04124 and SMc04123 overlap by 4 nucleotides SMc04126: SMc04126 - ABC transporter permease, at 149,339 to 150,472 SMc04126 SMc04125: SMc04125 - ABC transporter permease, at 150,477 to 151,448 SMc04125 SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910 SMc04124 SMc04123: SMc04123 - purine nucleoside phosphorylase, at 151,907 to 152,704 SMc04123 Position (kb) 150 151 152Strain fitness (log2 ratio) -1 0 1 2at 149.509 kb on + strand, within SMc04126at 149.509 kb on + strand, within SMc04126at 149.510 kb on - strand, within SMc04126at 149.615 kb on + strand, within SMc04126at 149.616 kb on + strand, within SMc04126at 149.616 kb on - strand, within SMc04126at 149.675 kb on + strand, within SMc04126at 149.675 kb on + strand, within SMc04126at 149.676 kb on - strand, within SMc04126at 149.770 kb on + strand, within SMc04126at 149.770 kb on + strand, within SMc04126at 149.771 kb on - strand, within SMc04126at 149.804 kb on - strand, within SMc04126at 149.822 kb on + strand, within SMc04126at 149.823 kb on - strand, within SMc04126at 149.823 kb on - strand, within SMc04126at 149.823 kb on - strand, within SMc04126at 150.117 kb on + strand, within SMc04126at 150.924 kb on + strand, within SMc04125at 150.925 kb on - strand, within SMc04125at 150.960 kb on + strand, within SMc04125at 150.960 kb on + strand, within SMc04125at 150.961 kb on - strand, within SMc04125at 151.003 kb on - strand, within SMc04125at 151.197 kb on + strand, within SMc04125at 151.197 kb on + strand, within SMc04125at 151.197 kb on + strand, within SMc04125at 151.198 kb on - strand, within SMc04125at 151.244 kb on + strand, within SMc04125at 151.244 kb on + strand, within SMc04125at 151.244 kb on + strand, within SMc04125at 151.245 kb on - strand, within SMc04125at 151.362 kb on - strandat 151.362 kb on - strandat 151.426 kb on + strandat 151.432 kb on - strandat 151.490 kb on + strandat 151.490 kb on + strandat 151.490 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.496 kb on + strandat 151.497 kb on - strandat 151.497 kb on - strandat 151.497 kb on - strandat 151.500 kb on + strand, within SMc04124at 151.501 kb on - strand, within SMc04124at 151.501 kb on - strand, within SMc04124at 151.502 kb on + strand, within SMc04124at 151.626 kb on + strand, within SMc04124at 151.626 kb on + strandat 151.626 kb on + strand, within SMc04124at 151.627 kb on - strand, within SMc04124at 151.627 kb on - strand, within SMc04124at 151.627 kb on - strand, within SMc04124at 151.697 kb on + strand, within SMc04124at 151.698 kb on - strand, within SMc04124at 151.825 kb on - strand, within SMc04124at 152.030 kb on + strand, within SMc04123at 152.031 kb on - strand, within SMc04123at 152.141 kb on + strand, within SMc04123at 152.145 kb on - strand, within SMc04123at 152.145 kb on - strand, within SMc04123at 152.145 kb on - strand, within SMc04123at 152.145 kb on - strand, within SMc04123at 152.361 kb on - strand, within SMc04123at 152.361 kb on - strand, within SMc04123at 152.432 kb on + strand, within SMc04123at 152.432 kb on + strand, within SMc04123at 152.433 kb on - strand, within SMc04123at 152.434 kb on + strand, within SMc04123at 152.434 kb on + strand, within SMc04123at 152.434 kb on + strand, within SMc04123at 152.434 kb on + strand, within SMc04123at 152.435 kb on - strand, within SMc04123at 152.435 kb on - strand, within SMc04123at 152.435 kb on - strand, within SMc04123at 152.435 kb on - strand, within SMc04123

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Per-strain Table

Position Strand Gene LocusTag Fraction Day4 LB
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149,509 + SMc04126 0.15 +2.0
149,509 + SMc04126 0.15 +1.7
149,510 - SMc04126 0.15 +1.4
149,615 + SMc04126 0.24 +1.6
149,616 + SMc04126 0.24 +1.3
149,616 - SMc04126 0.24 +1.1
149,675 + SMc04126 0.30 +1.4
149,675 + SMc04126 0.30 +1.1
149,676 - SMc04126 0.30 +1.8
149,770 + SMc04126 0.38 +2.2
149,770 + SMc04126 0.38 +1.5
149,771 - SMc04126 0.38 +1.5
149,804 - SMc04126 0.41 +1.6
149,822 + SMc04126 0.43 +1.5
149,823 - SMc04126 0.43 +1.4
149,823 - SMc04126 0.43 +1.3
149,823 - SMc04126 0.43 +1.7
150,117 + SMc04126 0.69 +1.6
150,924 + SMc04125 0.46 +1.4
150,925 - SMc04125 0.46 +1.7
150,960 + SMc04125 0.50 +1.4
150,960 + SMc04125 0.50 +1.3
150,961 - SMc04125 0.50 +1.5
151,003 - SMc04125 0.54 +2.1
151,197 + SMc04125 0.74 +1.8
151,197 + SMc04125 0.74 +1.5
151,197 + SMc04125 0.74 +1.6
151,198 - SMc04125 0.74 +1.7
151,244 + SMc04125 0.79 +1.7
151,244 + SMc04125 0.79 +1.7
151,244 + SMc04125 0.79 +1.9
151,245 - SMc04125 0.79 +1.6
151,362 - +1.6
151,362 - +1.8
151,426 + +1.4
151,432 - +1.6
151,490 + -0.2
151,490 + -0.3
151,490 + -0.0
151,496 + -1.0
151,496 + -0.3
151,496 + -0.3
151,496 + -0.2
151,496 + -0.4
151,496 + +0.0
151,496 + +0.9
151,496 + -0.6
151,496 + -0.4
151,497 - +0.3
151,497 - +1.1
151,497 - +0.5
151,500 + SMc04124 0.10 -0.3
151,501 - SMc04124 0.11 +0.4
151,501 - SMc04124 0.11 +0.7
151,502 + SMc04124 0.11 -0.2
151,626 + SMc04124 0.38 +0.1
151,626 + +1.5
151,626 + SMc04124 0.38 -0.1
151,627 - SMc04124 0.38 +0.1
151,627 - SMc04124 0.38 +0.5
151,627 - SMc04124 0.38 +0.7
151,697 + SMc04124 0.53 -0.5
151,698 - SMc04124 0.54 +0.8
151,825 - SMc04124 0.81 +0.9
152,030 + SMc04123 0.15 +0.2
152,031 - SMc04123 0.16 +0.5
152,141 + SMc04123 0.29 -0.0
152,145 - SMc04123 0.30 +0.5
152,145 - SMc04123 0.30 +0.0
152,145 - SMc04123 0.30 +0.1
152,145 - SMc04123 0.30 +0.2
152,361 - SMc04123 0.57 +0.1
152,361 - SMc04123 0.57 +0.3
152,432 + SMc04123 0.66 +0.6
152,432 + SMc04123 0.66 +0.7
152,433 - SMc04123 0.66 -0.1
152,434 + SMc04123 0.66 +0.1
152,434 + SMc04123 0.66 +0.4
152,434 + SMc04123 0.66 +0.4
152,434 + SMc04123 0.66 +0.3
152,435 - SMc04123 0.66 +0.1
152,435 - SMc04123 0.66 +0.2
152,435 - SMc04123 0.66 +0.2
152,435 - SMc04123 0.66 +0.5

Or see this region's nucleotide sequence