Experiment: Day4 LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04116 and SMc04115 are separated by 164 nucleotides SMc04115 and SMc04114 are separated by 251 nucleotides SMc04114 and SMc04113 are separated by 83 nucleotides
SMc04116: SMc04116 - transposase, at 158,715 to 159,878
SMc04116
SMc04115: SMc04115 - hypothetical protein, at 160,043 to 160,459
SMc04115
SMc04114: SMc04114 - pilin subunit protein, at 160,711 to 160,893
SMc04114
SMc04113: SMc04113 - pilus assembly transmembrane protein, at 160,977 to 161,501
SMc04113
Position (kb) 160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.044 kb on + strand at 160.044 kb on + strand at 160.044 kb on + strand at 160.350 kb on + strand, within SMc04115 at 160.351 kb on - strand, within SMc04115 at 160.351 kb on - strand, within SMc04115 at 160.477 kb on + strand at 160.478 kb on - strand at 160.635 kb on - strand at 160.706 kb on + strand at 160.707 kb on - strand at 160.836 kb on + strand, within SMc04114 at 160.836 kb on + strand, within SMc04114 at 160.836 kb on + strand, within SMc04114 at 160.836 kb on + strand, within SMc04114 at 160.837 kb on - strand, within SMc04114 at 160.837 kb on - strand, within SMc04114 at 160.837 kb on - strand, within SMc04114 at 160.911 kb on - strand at 160.948 kb on - strand at 161.003 kb on + strand at 161.004 kb on - strand at 161.293 kb on + strand, within SMc04113 at 161.294 kb on - strand, within SMc04113 at 161.295 kb on + strand, within SMc04113 at 161.295 kb on + strand, within SMc04113 at 161.359 kb on + strand, within SMc04113 at 161.359 kb on + strand, within SMc04113 at 161.360 kb on - strand, within SMc04113 at 161.360 kb on - strand, within SMc04113 at 161.360 kb on - strand, within SMc04113 at 161.418 kb on + strand, within SMc04113 at 161.455 kb on - strand at 161.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 LB remove 160,044 + +0.0 160,044 + -0.0 160,044 + +0.3 160,350 + SMc04115 0.74 -0.1 160,351 - SMc04115 0.74 -0.3 160,351 - SMc04115 0.74 -0.2 160,477 + -0.1 160,478 - -0.3 160,635 - -0.9 160,706 + -2.1 160,707 - -0.2 160,836 + SMc04114 0.68 +0.1 160,836 + SMc04114 0.68 -0.0 160,836 + SMc04114 0.68 -0.7 160,836 + SMc04114 0.68 +0.1 160,837 - SMc04114 0.69 -0.1 160,837 - SMc04114 0.69 +0.5 160,837 - SMc04114 0.69 +0.5 160,911 - -0.3 160,948 - -0.1 161,003 + +2.2 161,004 - +0.9 161,293 + SMc04113 0.60 -0.1 161,294 - SMc04113 0.60 +0.0 161,295 + SMc04113 0.61 -0.3 161,295 + SMc04113 0.61 +0.2 161,359 + SMc04113 0.73 -0.1 161,359 + SMc04113 0.73 +0.2 161,360 - SMc04113 0.73 -0.6 161,360 - SMc04113 0.73 +0.4 161,360 - SMc04113 0.73 -0.8 161,418 + SMc04113 0.84 -0.2 161,455 - -0.9 161,455 - -0.4
Or see this region's nucleotide sequence