Experiment: Day4 LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1421 and SMa1424 are separated by 10 nucleotides SMa1424 and SMa1427 are separated by 74 nucleotides
SMa1421: SMa1421 - ABC transporter ATP-binding protein, at 782,868 to 784,379
SMa1421
SMa1424: SMa1424 - ABC transporter permease, at 784,390 to 785,355
SMa1424
SMa1427: SMa1427 - ABC transporter substrate-binding protein, at 785,430 to 786,548
SMa1427
Position (kb) 784
785
786 Strain fitness (log2 ratio) -1
0
1 at 783.397 kb on + strand, within SMa1421 at 783.397 kb on + strand, within SMa1421 at 783.398 kb on - strand, within SMa1421 at 783.398 kb on - strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.458 kb on - strand, within SMa1421 at 783.458 kb on - strand, within SMa1421 at 783.542 kb on + strand, within SMa1421 at 783.543 kb on - strand, within SMa1421 at 783.604 kb on + strand, within SMa1421 at 783.606 kb on - strand, within SMa1421 at 783.631 kb on + strand, within SMa1421 at 783.632 kb on - strand, within SMa1421 at 783.632 kb on - strand, within SMa1421 at 783.633 kb on + strand, within SMa1421 at 783.740 kb on - strand, within SMa1421 at 783.740 kb on - strand, within SMa1421 at 783.789 kb on + strand, within SMa1421 at 784.079 kb on - strand, within SMa1421 at 784.228 kb on + strand at 784.229 kb on - strand at 784.237 kb on + strand at 784.237 kb on + strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.375 kb on + strand at 784.375 kb on + strand at 784.376 kb on - strand at 784.376 kb on - strand at 784.776 kb on - strand, within SMa1424 at 784.776 kb on - strand, within SMa1424 at 784.776 kb on - strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.915 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.390 kb on - strand at 785.444 kb on + strand at 785.620 kb on + strand, within SMa1427 at 785.726 kb on - strand, within SMa1427 at 786.082 kb on + strand, within SMa1427 at 786.082 kb on + strand, within SMa1427 at 786.082 kb on + strand, within SMa1427 at 786.142 kb on + strand, within SMa1427
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 LB remove 783,397 + SMa1421 0.35 -0.3 783,397 + SMa1421 0.35 -0.0 783,398 - SMa1421 0.35 -0.0 783,398 - SMa1421 0.35 -0.1 783,457 + SMa1421 0.39 -0.1 783,457 + SMa1421 0.39 +0.3 783,457 + SMa1421 0.39 -0.3 783,458 - SMa1421 0.39 +0.1 783,458 - SMa1421 0.39 +0.0 783,542 + SMa1421 0.45 +0.2 783,543 - SMa1421 0.45 -0.1 783,604 + SMa1421 0.49 -0.3 783,606 - SMa1421 0.49 +0.1 783,631 + SMa1421 0.50 +0.5 783,632 - SMa1421 0.51 +0.2 783,632 - SMa1421 0.51 -0.6 783,633 + SMa1421 0.51 -0.1 783,740 - SMa1421 0.58 -0.3 783,740 - SMa1421 0.58 +0.1 783,789 + SMa1421 0.61 -0.4 784,079 - SMa1421 0.80 -1.2 784,228 + -0.0 784,229 - -0.3 784,237 + +0.0 784,237 + -0.1 784,238 - -0.6 784,238 - +0.0 784,238 - +0.3 784,238 - -0.3 784,238 - -0.3 784,375 + +0.3 784,375 + +0.1 784,376 - +0.6 784,376 - -0.1 784,776 - SMa1424 0.40 -0.1 784,776 - SMa1424 0.40 -0.0 784,776 - SMa1424 0.40 +0.3 784,844 + SMa1424 0.47 +0.0 784,844 + SMa1424 0.47 -0.0 784,844 + SMa1424 0.47 +0.0 784,915 + SMa1424 0.54 -0.7 785,029 + SMa1424 0.66 -0.2 785,029 + SMa1424 0.66 +0.0 785,029 + SMa1424 0.66 -0.4 785,030 - SMa1424 0.66 +0.1 785,030 - SMa1424 0.66 -0.1 785,030 - SMa1424 0.66 -0.1 785,390 - +0.7 785,444 + -0.1 785,620 + SMa1427 0.17 -0.3 785,726 - SMa1427 0.26 +0.1 786,082 + SMa1427 0.58 +0.2 786,082 + SMa1427 0.58 -0.0 786,082 + SMa1427 0.58 +0.7 786,142 + SMa1427 0.64 +1.1
Or see this region's nucleotide sequence