Experiment: Day4 LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21340 and SM_b21341 are separated by 29 nucleotides SM_b21341 and SM_b21342 are separated by 53 nucleotides SM_b21342 and SM_b21343 are separated by 6 nucleotides
SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831
_b21340
SM_b21341: SM_b21341 - hypothetical protein, at 1,006,861 to 1,007,709
_b21341
SM_b21342: SM_b21342 - sugar uptake ABC transporter permease, at 1,007,763 to 1,008,761
_b21342
SM_b21343: SM_b21343 - sugar uptake ABC transporter permease, at 1,008,768 to 1,009,772
_b21343
Position (kb)
1007
1008
1009 Strain fitness (log2 ratio)
-1
0
1 at 1006.982 kb on + strand, within SM_b21341 at 1006.982 kb on + strand, within SM_b21341 at 1007.256 kb on + strand, within SM_b21341 at 1007.361 kb on - strand, within SM_b21341 at 1007.409 kb on - strand, within SM_b21341 at 1007.857 kb on + strand at 1007.978 kb on + strand, within SM_b21342 at 1007.991 kb on + strand, within SM_b21342 at 1007.991 kb on + strand, within SM_b21342 at 1007.991 kb on + strand, within SM_b21342 at 1007.992 kb on - strand, within SM_b21342 at 1008.103 kb on + strand, within SM_b21342 at 1008.227 kb on - strand, within SM_b21342 at 1008.304 kb on + strand, within SM_b21342 at 1008.305 kb on - strand, within SM_b21342 at 1008.353 kb on - strand, within SM_b21342 at 1008.481 kb on + strand, within SM_b21342 at 1008.604 kb on + strand, within SM_b21342 at 1008.605 kb on - strand, within SM_b21342 at 1008.629 kb on - strand, within SM_b21342 at 1008.872 kb on - strand, within SM_b21343 at 1009.072 kb on + strand, within SM_b21343 at 1009.072 kb on + strand, within SM_b21343 at 1009.072 kb on + strand, within SM_b21343 at 1009.073 kb on - strand, within SM_b21343 at 1009.101 kb on + strand, within SM_b21343 at 1009.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 LB remove 1,006,982 + SM_b21341 0.14 -0.2 1,006,982 + SM_b21341 0.14 -0.2 1,007,256 + SM_b21341 0.47 +0.0 1,007,361 - SM_b21341 0.59 -0.3 1,007,409 - SM_b21341 0.65 +1.0 1,007,857 + +0.2 1,007,978 + SM_b21342 0.22 -0.2 1,007,991 + SM_b21342 0.23 +0.1 1,007,991 + SM_b21342 0.23 +0.4 1,007,991 + SM_b21342 0.23 -0.6 1,007,992 - SM_b21342 0.23 -0.0 1,008,103 + SM_b21342 0.34 +0.1 1,008,227 - SM_b21342 0.46 -0.1 1,008,304 + SM_b21342 0.54 -0.2 1,008,305 - SM_b21342 0.54 +0.5 1,008,353 - SM_b21342 0.59 +1.3 1,008,481 + SM_b21342 0.72 +0.2 1,008,604 + SM_b21342 0.84 -0.3 1,008,605 - SM_b21342 0.84 +0.3 1,008,629 - SM_b21342 0.87 +0.4 1,008,872 - SM_b21343 0.10 +0.5 1,009,072 + SM_b21343 0.30 +0.3 1,009,072 + SM_b21343 0.30 -0.0 1,009,072 + SM_b21343 0.30 +0.1 1,009,073 - SM_b21343 0.30 -0.0 1,009,101 + SM_b21343 0.33 -0.3 1,009,697 - +0.3
Or see this region's nucleotide sequence