Experiment: Day4 LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20529 and SM_b20530 are separated by 32 nucleotides SM_b20530 and SM_b20531 are separated by 234 nucleotides SM_b20531 and SM_b20532 are separated by 1 nucleotides
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
SM_b20530: SM_b20530 - hypothetical protein, at 554,407 to 554,745
_b20530
SM_b20531: SM_b20531 - RNA polymerase sigma factor, at 554,980 to 555,516
_b20531
SM_b20532: SM_b20532 - hypothetical protein, at 555,518 to 556,156
_b20532
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.120 kb on - strand, within SM_b20529 at 554.151 kb on + strand, within SM_b20529 at 554.152 kb on - strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.517 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.809 kb on + strand at 554.809 kb on + strand at 554.810 kb on - strand at 554.810 kb on - strand at 554.823 kb on - strand at 554.877 kb on - strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 555.050 kb on - strand, within SM_b20531 at 555.050 kb on - strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.178 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.393 kb on + strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.395 kb on + strand, within SM_b20531 at 555.643 kb on - strand, within SM_b20532 at 555.664 kb on + strand, within SM_b20532 at 555.667 kb on + strand, within SM_b20532 at 555.966 kb on - strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.159 kb on - strand at 556.181 kb on - strand at 556.196 kb on - strand at 556.318 kb on + strand at 556.372 kb on + strand at 556.372 kb on + strand at 556.372 kb on + strand at 556.373 kb on - strand at 556.373 kb on - strand at 556.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 LB remove 554,001 + SM_b20529 0.60 -0.0 554,001 + SM_b20529 0.60 +0.2 554,001 + SM_b20529 0.60 +0.6 554,120 - SM_b20529 0.73 -0.2 554,151 + SM_b20529 0.76 -0.1 554,152 - SM_b20529 0.76 -0.4 554,205 + SM_b20529 0.82 -0.5 554,205 + SM_b20529 0.82 -0.1 554,205 + SM_b20529 0.82 -0.4 554,206 - SM_b20529 0.82 -0.1 554,206 - SM_b20529 0.82 -0.1 554,517 - SM_b20530 0.32 +0.3 554,595 - SM_b20530 0.55 +0.6 554,595 - SM_b20530 0.55 +0.1 554,595 - SM_b20530 0.55 -0.4 554,595 - SM_b20530 0.55 +0.2 554,595 - SM_b20530 0.55 +0.2 554,809 + -0.3 554,809 + +0.4 554,810 - +0.6 554,810 - +0.1 554,823 - +0.2 554,877 - -0.1 554,940 + -0.2 554,940 + -0.0 554,940 + +0.0 554,940 + -1.1 554,940 + -0.2 554,941 - +0.4 554,941 - +0.6 554,941 - -0.0 554,941 - +0.2 554,941 - +0.1 555,050 - SM_b20531 0.13 -0.4 555,050 - SM_b20531 0.13 +0.4 555,167 + SM_b20531 0.35 -0.2 555,167 + SM_b20531 0.35 +0.4 555,168 - SM_b20531 0.35 -0.1 555,168 - SM_b20531 0.35 -0.3 555,177 + SM_b20531 0.37 +0.2 555,177 + SM_b20531 0.37 +0.1 555,177 + SM_b20531 0.37 +0.1 555,177 + SM_b20531 0.37 -0.2 555,177 + SM_b20531 0.37 -0.4 555,178 - SM_b20531 0.37 +0.1 555,249 - SM_b20531 0.50 +0.8 555,249 - SM_b20531 0.50 -0.1 555,393 + SM_b20531 0.77 -0.1 555,394 - SM_b20531 0.77 +0.3 555,394 - SM_b20531 0.77 -1.0 555,394 - SM_b20531 0.77 +1.2 555,394 - SM_b20531 0.77 -0.7 555,394 - SM_b20531 0.77 -0.5 555,394 - SM_b20531 0.77 +0.3 555,394 - SM_b20531 0.77 +0.1 555,395 + SM_b20531 0.77 +0.0 555,643 - SM_b20532 0.20 +0.2 555,664 + SM_b20532 0.23 +0.5 555,667 + SM_b20532 0.23 +0.5 555,966 - SM_b20532 0.70 -0.4 556,040 + SM_b20532 0.82 -0.2 556,040 + SM_b20532 0.82 +0.1 556,040 + SM_b20532 0.82 +0.3 556,040 + SM_b20532 0.82 -0.0 556,040 + SM_b20532 0.82 +0.0 556,041 - SM_b20532 0.82 -0.4 556,041 - SM_b20532 0.82 -0.2 556,041 - SM_b20532 0.82 +0.1 556,041 - SM_b20532 0.82 +0.4 556,041 - SM_b20532 0.82 +0.3 556,041 - SM_b20532 0.82 -0.0 556,159 - -0.3 556,181 - +0.2 556,196 - +0.1 556,318 + +0.1 556,372 + +0.0 556,372 + -0.1 556,372 + -0.3 556,373 - +0.6 556,373 - -0.3 556,373 - +0.1
Or see this region's nucleotide sequence