Experiment: Day4 LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20505 and SM_b20506 are separated by 43 nucleotides SM_b20506 and SM_b20507 are separated by 2 nucleotides SM_b20507 and SM_b20508 are separated by 64 nucleotides
SM_b20505: SM_b20505 - trifolitoxin immunity protein, at 527,073 to 527,861
_b20505
SM_b20506: SM_b20506 - L-arabinose transporter permease, at 527,905 to 528,858
_b20506
SM_b20507: SM_b20507 - L-arabinose transporter ATP-binding protein, at 528,861 to 530,387
_b20507
SM_b20508: SM_b20508 - sugar ABC transporter substrate-binding protein, at 530,452 to 531,435
_b20508
Position (kb) 528
529
530
531 Strain fitness (log2 ratio) -1
0
1 at 527.887 kb on + strand at 527.937 kb on + strand at 527.937 kb on + strand at 527.938 kb on - strand at 527.984 kb on + strand at 527.990 kb on + strand at 527.990 kb on + strand at 527.991 kb on - strand at 527.991 kb on - strand at 527.991 kb on - strand at 528.053 kb on - strand, within SM_b20506 at 528.202 kb on + strand, within SM_b20506 at 528.203 kb on - strand, within SM_b20506 at 528.316 kb on - strand, within SM_b20506 at 528.470 kb on - strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.589 kb on + strand, within SM_b20506 at 528.640 kb on + strand, within SM_b20506 at 528.867 kb on + strand at 528.867 kb on + strand at 528.867 kb on + strand at 528.867 kb on + strand at 528.868 kb on - strand at 528.868 kb on - strand at 528.868 kb on - strand at 528.868 kb on - strand at 529.034 kb on + strand, within SM_b20507 at 529.281 kb on - strand, within SM_b20507 at 529.489 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.817 kb on + strand, within SM_b20507 at 530.115 kb on + strand, within SM_b20507 at 530.179 kb on + strand, within SM_b20507 at 530.199 kb on + strand, within SM_b20507 at 530.200 kb on - strand, within SM_b20507 at 530.247 kb on + strand at 530.247 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.942 kb on + strand, within SM_b20508 at 530.943 kb on - strand, within SM_b20508 at 531.048 kb on + strand, within SM_b20508 at 531.229 kb on + strand, within SM_b20508 at 531.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Day4 LB remove 527,887 + +0.0 527,937 + -0.2 527,937 + -0.7 527,938 - +0.7 527,984 + +0.3 527,990 + +0.1 527,990 + -0.2 527,991 - +0.1 527,991 - -0.1 527,991 - -0.1 528,053 - SM_b20506 0.16 +0.0 528,202 + SM_b20506 0.31 +0.0 528,203 - SM_b20506 0.31 +0.1 528,316 - SM_b20506 0.43 -0.3 528,470 - SM_b20506 0.59 -0.1 528,496 + SM_b20506 0.62 -0.0 528,496 + SM_b20506 0.62 +0.0 528,496 + SM_b20506 0.62 +0.1 528,589 + SM_b20506 0.72 -0.1 528,640 + SM_b20506 0.77 +0.1 528,867 + +0.3 528,867 + -0.5 528,867 + -0.2 528,867 + -0.1 528,868 - +0.0 528,868 - -0.1 528,868 - +0.4 528,868 - +0.1 529,034 + SM_b20507 0.11 -0.4 529,281 - SM_b20507 0.28 +0.3 529,489 + SM_b20507 0.41 +0.3 529,804 + SM_b20507 0.62 -0.1 529,804 + SM_b20507 0.62 +0.1 529,804 + SM_b20507 0.62 +0.4 529,804 + SM_b20507 0.62 -0.1 529,804 + SM_b20507 0.62 -0.1 529,805 - SM_b20507 0.62 -0.1 529,805 - SM_b20507 0.62 -0.2 529,817 + SM_b20507 0.63 +0.1 530,115 + SM_b20507 0.82 -0.0 530,179 + SM_b20507 0.86 +0.1 530,199 + SM_b20507 0.88 +0.3 530,200 - SM_b20507 0.88 -0.0 530,247 + -0.1 530,247 + -0.0 530,486 + -0.1 530,486 + +0.8 530,487 - -0.4 530,487 - +0.1 530,487 - -0.3 530,487 - +0.5 530,487 - +0.1 530,561 + SM_b20508 0.11 +0.4 530,561 + SM_b20508 0.11 -0.4 530,561 + SM_b20508 0.11 -0.3 530,561 + SM_b20508 0.11 -0.4 530,562 - SM_b20508 0.11 +0.1 530,562 - SM_b20508 0.11 +0.1 530,562 - SM_b20508 0.11 -0.7 530,562 - SM_b20508 0.11 -0.2 530,562 - SM_b20508 0.11 +0.0 530,942 + SM_b20508 0.50 -0.3 530,943 - SM_b20508 0.50 -0.3 531,048 + SM_b20508 0.61 -0.0 531,229 + SM_b20508 0.79 +0.3 531,358 + -0.7
Or see this region's nucleotide sequence