Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06453

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06452 and H281DRAFT_06453 are separated by 503 nucleotides H281DRAFT_06452: H281DRAFT_06452 - putative iron-dependent peroxidase, at 59,393 to 60,439 _06452 H281DRAFT_06453: H281DRAFT_06453 - Protein required for attachment to host cells, at 60,943 to 61,338 _06453 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 60.022 kb on - strand, within H281DRAFT_06452at 60.102 kb on - strand, within H281DRAFT_06452at 60.453 kb on + strandat 60.454 kb on - strandat 60.454 kb on - strandat 60.463 kb on + strandat 60.464 kb on - strandat 60.700 kb on - strandat 60.884 kb on - strandat 60.968 kb on - strandat 60.993 kb on - strand, within H281DRAFT_06453at 61.002 kb on + strand, within H281DRAFT_06453at 61.002 kb on + strand, within H281DRAFT_06453at 61.051 kb on + strand, within H281DRAFT_06453at 61.052 kb on - strand, within H281DRAFT_06453at 61.503 kb on - strandat 61.506 kb on - strandat 61.526 kb on - strandat 61.526 kb on - strandat 61.543 kb on - strandat 61.546 kb on + strandat 61.546 kb on + strandat 61.546 kb on + strandat 61.546 kb on + strandat 61.547 kb on - strandat 61.685 kb on + strandat 62.001 kb on + strandat 62.186 kb on + strandat 62.189 kb on + strandat 62.189 kb on + strandat 62.217 kb on - strandat 62.227 kb on + strandat 62.228 kb on - strandat 62.326 kb on + strandat 62.326 kb on + strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.327 kb on - strandat 62.330 kb on + strandat 62.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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60,022 - H281DRAFT_06452 0.60 +0.8
60,102 - H281DRAFT_06452 0.68 -0.4
60,453 + -0.4
60,454 - +0.3
60,454 - -1.2
60,463 + -0.7
60,464 - +0.2
60,700 - -0.5
60,884 - -0.5
60,968 - +1.2
60,993 - H281DRAFT_06453 0.13 -0.8
61,002 + H281DRAFT_06453 0.15 +0.5
61,002 + H281DRAFT_06453 0.15 +0.2
61,051 + H281DRAFT_06453 0.27 +2.2
61,052 - H281DRAFT_06453 0.28 +0.0
61,503 - +0.0
61,506 - -0.0
61,526 - +0.3
61,526 - -1.0
61,543 - +0.1
61,546 + -0.2
61,546 + -0.6
61,546 + +0.4
61,546 + +0.5
61,547 - +0.0
61,685 + +0.5
62,001 + +0.3
62,186 + +0.0
62,189 + +1.0
62,189 + +0.4
62,217 - +1.3
62,227 + -2.1
62,228 - -0.1
62,326 + -0.5
62,326 + -0.1
62,327 - +2.6
62,327 - +0.2
62,327 - -0.3
62,327 - +0.2
62,327 - -0.4
62,330 + +0.3
62,331 - +0.8

Or see this region's nucleotide sequence