Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05737

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05736 and H281DRAFT_05737 are separated by 702 nucleotidesH281DRAFT_05737 and H281DRAFT_05738 are separated by 45 nucleotidesH281DRAFT_05738 and H281DRAFT_05739 are separated by 226 nucleotides H281DRAFT_05736: H281DRAFT_05736 - Glycosyltransferase involved in cell wall bisynthesis, at 8,425 to 9,489 _05736 H281DRAFT_05737: H281DRAFT_05737 - flagellar transcriptional activator FlhD, at 10,192 to 10,512 _05737 H281DRAFT_05738: H281DRAFT_05738 - flagellar transcriptional activator FlhC, at 10,558 to 11,118 _05738 H281DRAFT_05739: H281DRAFT_05739 - chemotaxis protein MotA, at 11,345 to 12,205 _05739 Position (kb) 10 11Strain fitness (log2 ratio) -1 0 1at 9.200 kb on + strand, within H281DRAFT_05736at 9.200 kb on + strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.247 kb on + strand, within H281DRAFT_05736at 9.247 kb on + strand, within H281DRAFT_05736at 9.247 kb on + strand, within H281DRAFT_05736at 9.248 kb on - strand, within H281DRAFT_05736at 9.410 kb on + strandat 9.410 kb on + strandat 9.411 kb on - strandat 9.461 kb on + strandat 9.462 kb on - strandat 9.508 kb on - strandat 9.680 kb on - strandat 9.701 kb on + strandat 9.702 kb on - strandat 9.785 kb on + strandat 9.787 kb on + strandat 9.787 kb on + strandat 9.787 kb on + strandat 9.788 kb on - strandat 9.823 kb on + strandat 9.824 kb on - strandat 9.824 kb on - strandat 9.824 kb on - strandat 9.847 kb on + strandat 9.849 kb on + strandat 9.849 kb on + strandat 9.924 kb on - strandat 9.939 kb on + strandat 9.964 kb on + strandat 10.012 kb on + strandat 10.012 kb on + strandat 10.028 kb on + strandat 10.028 kb on + strandat 10.028 kb on + strandat 10.029 kb on - strandat 10.029 kb on - strandat 10.175 kb on + strandat 10.175 kb on + strandat 10.176 kb on - strandat 10.243 kb on + strand, within H281DRAFT_05737at 10.243 kb on + strand, within H281DRAFT_05737at 10.244 kb on - strand, within H281DRAFT_05737at 10.244 kb on - strand, within H281DRAFT_05737at 10.551 kb on + strandat 10.551 kb on + strandat 10.552 kb on - strandat 10.552 kb on - strandat 10.565 kb on - strandat 10.566 kb on + strandat 10.567 kb on - strandat 10.687 kb on + strand, within H281DRAFT_05738at 10.687 kb on + strand, within H281DRAFT_05738at 10.687 kb on + strand, within H281DRAFT_05738at 10.687 kb on + strand, within H281DRAFT_05738at 10.688 kb on - strand, within H281DRAFT_05738at 10.688 kb on - strand, within H281DRAFT_05738at 10.688 kb on - strand, within H281DRAFT_05738at 10.786 kb on + strand, within H281DRAFT_05738at 10.786 kb on + strand, within H281DRAFT_05738at 10.786 kb on + strand, within H281DRAFT_05738at 10.786 kb on + strand, within H281DRAFT_05738at 10.786 kb on + strand, within H281DRAFT_05738at 10.796 kb on - strand, within H281DRAFT_05738at 11.022 kb on + strand, within H281DRAFT_05738at 11.022 kb on + strand, within H281DRAFT_05738at 11.022 kb on + strand, within H281DRAFT_05738at 11.023 kb on - strand, within H281DRAFT_05738at 11.023 kb on - strand, within H281DRAFT_05738at 11.244 kb on + strandat 11.296 kb on + strandat 11.297 kb on - strandat 11.469 kb on + strand, within H281DRAFT_05739

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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9,200 + H281DRAFT_05736 0.73 +0.2
9,200 + H281DRAFT_05736 0.73 -0.5
9,201 - H281DRAFT_05736 0.73 +0.2
9,201 - H281DRAFT_05736 0.73 +0.4
9,201 - H281DRAFT_05736 0.73 -0.2
9,201 - H281DRAFT_05736 0.73 +0.1
9,201 - H281DRAFT_05736 0.73 +0.4
9,247 + H281DRAFT_05736 0.77 +0.2
9,247 + H281DRAFT_05736 0.77 +0.3
9,247 + H281DRAFT_05736 0.77 +0.7
9,248 - H281DRAFT_05736 0.77 +0.1
9,410 + +0.4
9,410 + -0.8
9,411 - +0.3
9,461 + +0.1
9,462 - +0.1
9,508 - +0.5
9,680 - +0.5
9,701 + +0.2
9,702 - -0.6
9,785 + -1.2
9,787 + +0.4
9,787 + -0.2
9,787 + +1.1
9,788 - -0.5
9,823 + +0.2
9,824 - +0.8
9,824 - +0.3
9,824 - +0.7
9,847 + -0.3
9,849 + -0.4
9,849 + +0.0
9,924 - +0.4
9,939 + +0.2
9,964 + -0.3
10,012 + -0.1
10,012 + +0.7
10,028 + +0.3
10,028 + +0.1
10,028 + +0.1
10,029 - +0.3
10,029 - -0.1
10,175 + +0.4
10,175 + +1.4
10,176 - +0.2
10,243 + H281DRAFT_05737 0.16 +0.9
10,243 + H281DRAFT_05737 0.16 +0.7
10,244 - H281DRAFT_05737 0.16 +0.3
10,244 - H281DRAFT_05737 0.16 +0.9
10,551 + +0.3
10,551 + +0.2
10,552 - -1.4
10,552 - -0.2
10,565 - -0.4
10,566 + +0.0
10,567 - -0.3
10,687 + H281DRAFT_05738 0.23 +0.3
10,687 + H281DRAFT_05738 0.23 +0.0
10,687 + H281DRAFT_05738 0.23 -0.1
10,687 + H281DRAFT_05738 0.23 +0.4
10,688 - H281DRAFT_05738 0.23 +0.7
10,688 - H281DRAFT_05738 0.23 +0.2
10,688 - H281DRAFT_05738 0.23 -1.3
10,786 + H281DRAFT_05738 0.41 +0.1
10,786 + H281DRAFT_05738 0.41 -0.1
10,786 + H281DRAFT_05738 0.41 -0.1
10,786 + H281DRAFT_05738 0.41 +0.1
10,786 + H281DRAFT_05738 0.41 -0.4
10,796 - H281DRAFT_05738 0.42 -1.2
11,022 + H281DRAFT_05738 0.83 -0.1
11,022 + H281DRAFT_05738 0.83 -0.8
11,022 + H281DRAFT_05738 0.83 -0.8
11,023 - H281DRAFT_05738 0.83 -0.1
11,023 - H281DRAFT_05738 0.83 -0.0
11,244 + +0.9
11,296 + +0.2
11,297 - +0.9
11,469 + H281DRAFT_05739 0.14 -0.0

Or see this region's nucleotide sequence