Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05622

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05621 and H281DRAFT_05622 are separated by 139 nucleotidesH281DRAFT_05622 and H281DRAFT_05623 are separated by 43 nucleotides H281DRAFT_05621: H281DRAFT_05621 - glutamate synthase (NADH) small subunit, at 46,079 to 47,548 _05621 H281DRAFT_05622: H281DRAFT_05622 - D-amino-acid dehydrogenase, at 47,688 to 49,016 _05622 H281DRAFT_05623: H281DRAFT_05623 - Predicted arabinose efflux permease, MFS family, at 49,060 to 50,319 _05623 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 47.105 kb on + strand, within H281DRAFT_05621at 47.405 kb on + strandat 47.405 kb on + strandat 47.409 kb on - strandat 47.658 kb on + strandat 48.118 kb on + strand, within H281DRAFT_05622at 48.146 kb on + strand, within H281DRAFT_05622at 48.392 kb on + strand, within H281DRAFT_05622at 48.392 kb on + strand, within H281DRAFT_05622at 48.393 kb on - strand, within H281DRAFT_05622at 48.393 kb on - strand, within H281DRAFT_05622at 48.398 kb on + strand, within H281DRAFT_05622at 48.400 kb on - strand, within H281DRAFT_05622at 48.610 kb on + strand, within H281DRAFT_05622at 48.611 kb on - strand, within H281DRAFT_05622at 48.629 kb on - strand, within H281DRAFT_05622at 48.629 kb on - strand, within H281DRAFT_05622at 48.676 kb on + strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.680 kb on - strand, within H281DRAFT_05622at 48.779 kb on + strand, within H281DRAFT_05622at 48.817 kb on + strand, within H281DRAFT_05622at 48.817 kb on + strand, within H281DRAFT_05622at 48.965 kb on - strandat 49.023 kb on - strandat 49.023 kb on - strandat 49.285 kb on + strand, within H281DRAFT_05623at 49.285 kb on + strand, within H281DRAFT_05623at 49.285 kb on + strand, within H281DRAFT_05623at 49.285 kb on + strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.298 kb on + strand, within H281DRAFT_05623at 49.299 kb on - strand, within H281DRAFT_05623at 49.299 kb on - strand, within H281DRAFT_05623at 49.391 kb on + strand, within H281DRAFT_05623at 49.479 kb on + strand, within H281DRAFT_05623at 49.480 kb on - strand, within H281DRAFT_05623at 49.482 kb on - strand, within H281DRAFT_05623at 49.482 kb on - strand, within H281DRAFT_05623at 49.518 kb on - strand, within H281DRAFT_05623at 49.563 kb on - strand, within H281DRAFT_05623at 49.718 kb on + strand, within H281DRAFT_05623at 49.718 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.752 kb on - strand, within H281DRAFT_05623at 49.805 kb on + strand, within H281DRAFT_05623at 49.805 kb on + strand, within H281DRAFT_05623at 49.805 kb on + strand, within H281DRAFT_05623at 49.806 kb on - strand, within H281DRAFT_05623at 49.839 kb on - strand, within H281DRAFT_05623

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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47,105 + H281DRAFT_05621 0.70 -4.1
47,405 + -2.7
47,405 + -3.9
47,409 - -2.3
47,658 + +0.1
48,118 + H281DRAFT_05622 0.32 -0.3
48,146 + H281DRAFT_05622 0.34 +0.1
48,392 + H281DRAFT_05622 0.53 +0.2
48,392 + H281DRAFT_05622 0.53 +0.1
48,393 - H281DRAFT_05622 0.53 -0.2
48,393 - H281DRAFT_05622 0.53 -0.2
48,398 + H281DRAFT_05622 0.53 -0.5
48,400 - H281DRAFT_05622 0.54 -0.0
48,610 + H281DRAFT_05622 0.69 +0.5
48,611 - H281DRAFT_05622 0.69 +0.7
48,629 - H281DRAFT_05622 0.71 -0.0
48,629 - H281DRAFT_05622 0.71 -0.5
48,676 + H281DRAFT_05622 0.74 +0.6
48,677 - H281DRAFT_05622 0.74 +1.1
48,677 - H281DRAFT_05622 0.74 +0.1
48,677 - H281DRAFT_05622 0.74 -0.1
48,677 - H281DRAFT_05622 0.74 -0.3
48,680 - H281DRAFT_05622 0.75 +0.5
48,779 + H281DRAFT_05622 0.82 +0.1
48,817 + H281DRAFT_05622 0.85 +0.5
48,817 + H281DRAFT_05622 0.85 +1.1
48,965 - +1.0
49,023 - -0.1
49,023 - -0.2
49,285 + H281DRAFT_05623 0.18 +1.0
49,285 + H281DRAFT_05623 0.18 +0.2
49,285 + H281DRAFT_05623 0.18 +0.6
49,285 + H281DRAFT_05623 0.18 -0.4
49,286 - H281DRAFT_05623 0.18 -0.0
49,286 - H281DRAFT_05623 0.18 -0.1
49,286 - H281DRAFT_05623 0.18 +0.1
49,286 - H281DRAFT_05623 0.18 -0.5
49,298 + H281DRAFT_05623 0.19 -0.1
49,299 - H281DRAFT_05623 0.19 +0.4
49,299 - H281DRAFT_05623 0.19 -2.0
49,391 + H281DRAFT_05623 0.26 -0.2
49,479 + H281DRAFT_05623 0.33 +1.6
49,480 - H281DRAFT_05623 0.33 -0.3
49,482 - H281DRAFT_05623 0.33 +0.2
49,482 - H281DRAFT_05623 0.33 +1.8
49,518 - H281DRAFT_05623 0.36 +1.3
49,563 - H281DRAFT_05623 0.40 -0.0
49,718 + H281DRAFT_05623 0.52 +0.5
49,718 + H281DRAFT_05623 0.52 +0.7
49,751 + H281DRAFT_05623 0.55 -0.2
49,751 + H281DRAFT_05623 0.55 +0.8
49,751 + H281DRAFT_05623 0.55 -0.0
49,751 + H281DRAFT_05623 0.55 +0.6
49,751 + H281DRAFT_05623 0.55 +0.0
49,752 - H281DRAFT_05623 0.55 -0.7
49,805 + H281DRAFT_05623 0.59 -0.2
49,805 + H281DRAFT_05623 0.59 -0.5
49,805 + H281DRAFT_05623 0.59 +0.3
49,806 - H281DRAFT_05623 0.59 +0.2
49,839 - H281DRAFT_05623 0.62 +0.5

Or see this region's nucleotide sequence