Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04713

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04712 and H281DRAFT_04713 are separated by 192 nucleotidesH281DRAFT_04713 and H281DRAFT_04714 are separated by 108 nucleotides H281DRAFT_04712: H281DRAFT_04712 - DNA mismatch repair protein MutL, at 125,265 to 127,310 _04712 H281DRAFT_04713: H281DRAFT_04713 - membrane-associated protein, at 127,503 to 128,168 _04713 H281DRAFT_04714: H281DRAFT_04714 - small conductance mechanosensitive channel, at 128,277 to 129,089 _04714 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1at 126.506 kb on - strand, within H281DRAFT_04712at 126.506 kb on - strand, within H281DRAFT_04712at 126.622 kb on - strand, within H281DRAFT_04712at 127.083 kb on - strand, within H281DRAFT_04712at 127.319 kb on + strandat 127.320 kb on - strandat 127.321 kb on + strandat 127.321 kb on + strandat 127.490 kb on + strandat 127.490 kb on + strandat 127.491 kb on - strandat 127.491 kb on - strandat 127.491 kb on - strandat 127.516 kb on + strandat 127.523 kb on - strandat 127.590 kb on + strand, within H281DRAFT_04713at 127.591 kb on - strand, within H281DRAFT_04713at 127.591 kb on - strand, within H281DRAFT_04713at 127.764 kb on + strand, within H281DRAFT_04713at 127.764 kb on + strand, within H281DRAFT_04713at 127.765 kb on - strand, within H281DRAFT_04713at 127.765 kb on - strand, within H281DRAFT_04713at 127.765 kb on - strand, within H281DRAFT_04713at 127.765 kb on - strand, within H281DRAFT_04713at 127.765 kb on - strand, within H281DRAFT_04713at 128.032 kb on - strand, within H281DRAFT_04713at 128.046 kb on - strand, within H281DRAFT_04713at 128.064 kb on + strand, within H281DRAFT_04713at 128.185 kb on + strandat 128.358 kb on - strandat 128.368 kb on + strand, within H281DRAFT_04714at 128.368 kb on + strand, within H281DRAFT_04714at 128.482 kb on - strand, within H281DRAFT_04714at 128.640 kb on - strand, within H281DRAFT_04714at 128.649 kb on - strand, within H281DRAFT_04714at 129.126 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
126,506 - H281DRAFT_04712 0.61 +0.1
126,506 - H281DRAFT_04712 0.61 +0.5
126,622 - H281DRAFT_04712 0.66 +0.7
127,083 - H281DRAFT_04712 0.89 -0.0
127,319 + -0.2
127,320 - +0.4
127,321 + +0.3
127,321 + -0.1
127,490 + +0.8
127,490 + -0.7
127,491 - -0.0
127,491 - +0.6
127,491 - -0.4
127,516 + +0.3
127,523 - -1.0
127,590 + H281DRAFT_04713 0.13 -0.3
127,591 - H281DRAFT_04713 0.13 -1.9
127,591 - H281DRAFT_04713 0.13 -0.0
127,764 + H281DRAFT_04713 0.39 -0.2
127,764 + H281DRAFT_04713 0.39 +0.0
127,765 - H281DRAFT_04713 0.39 -0.2
127,765 - H281DRAFT_04713 0.39 +0.4
127,765 - H281DRAFT_04713 0.39 -0.3
127,765 - H281DRAFT_04713 0.39 -0.1
127,765 - H281DRAFT_04713 0.39 -0.5
128,032 - H281DRAFT_04713 0.79 -0.4
128,046 - H281DRAFT_04713 0.82 +0.0
128,064 + H281DRAFT_04713 0.84 +1.0
128,185 + +0.4
128,358 - -0.1
128,368 + H281DRAFT_04714 0.11 -0.9
128,368 + H281DRAFT_04714 0.11 +0.2
128,482 - H281DRAFT_04714 0.25 +0.6
128,640 - H281DRAFT_04714 0.45 +0.8
128,649 - H281DRAFT_04714 0.46 +0.1
129,126 - -0.3

Or see this region's nucleotide sequence