Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04403

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04402 and H281DRAFT_04403 are separated by 96 nucleotidesH281DRAFT_04403 and H281DRAFT_04404 are separated by 230 nucleotidesH281DRAFT_04404 and H281DRAFT_04405 are separated by 11 nucleotides H281DRAFT_04402: H281DRAFT_04402 - carbamoyl-phosphate synthase small subunit, at 118,195 to 119,349 _04402 H281DRAFT_04403: H281DRAFT_04403 - carbamoyl-phosphate synthase large subunit, at 119,446 to 122,700 _04403 H281DRAFT_04404: H281DRAFT_04404 - GreA/GreB family elongation factor, at 122,931 to 123,407 _04404 H281DRAFT_04405: H281DRAFT_04405 - protein of unknown function (DUF4149), at 123,419 to 123,937 _04405 Position (kb) 119 120 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.376 kb on + strandat 119.428 kb on + strandat 119.428 kb on + strandat 119.428 kb on + strandat 119.429 kb on - strandat 122.672 kb on + strandat 122.673 kb on - strandat 122.725 kb on + strandat 122.725 kb on + strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.804 kb on + strandat 122.930 kb on + strandat 122.939 kb on + strandat 122.940 kb on - strandat 122.940 kb on - strandat 123.072 kb on + strand, within H281DRAFT_04404at 123.072 kb on + strand, within H281DRAFT_04404at 123.072 kb on + strand, within H281DRAFT_04404at 123.378 kb on + strandat 123.379 kb on - strandat 123.395 kb on + strandat 123.396 kb on - strandat 123.396 kb on - strandat 123.396 kb on - strandat 123.399 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
119,376 + +0.6
119,428 + +0.5
119,428 + +0.2
119,428 + -0.3
119,429 - -1.9
122,672 + -0.5
122,673 - -3.1
122,725 + +0.5
122,725 + +0.5
122,726 - +1.2
122,726 - -1.0
122,726 - +0.3
122,726 - +0.2
122,726 - +0.0
122,804 + -1.0
122,930 + +0.3
122,939 + -0.6
122,940 - +0.0
122,940 - +0.3
123,072 + H281DRAFT_04404 0.30 -0.2
123,072 + H281DRAFT_04404 0.30 +0.3
123,072 + H281DRAFT_04404 0.30 -1.2
123,378 + -0.3
123,379 - -1.3
123,395 + -0.1
123,396 - -1.0
123,396 - -0.3
123,396 - -0.1
123,399 + -0.1

Or see this region's nucleotide sequence