Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02908 and H281DRAFT_02909 are separated by 494 nucleotides H281DRAFT_02909 and H281DRAFT_02910 are separated by 125 nucleotides H281DRAFT_02910 and H281DRAFT_02911 are separated by 394 nucleotides H281DRAFT_02911 and H281DRAFT_02912 are separated by 128 nucleotides
H281DRAFT_02908: H281DRAFT_02908 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 516,665 to 518,146
_02908
H281DRAFT_02909: H281DRAFT_02909 - Predicted periplasmic or secreted lipoprotein, at 518,641 to 518,979
_02909
H281DRAFT_02910: H281DRAFT_02910 - conserved hypothetical protein, at 519,105 to 519,554
_02910
H281DRAFT_02911: H281DRAFT_02911 - hypothetical protein, at 519,949 to 520,203
_02911
H281DRAFT_02912: H281DRAFT_02912 - Glycine zipper, at 520,332 to 520,913
_02912
Position (kb) 519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 518.835 kb on + strand, within H281DRAFT_02909 at 518.835 kb on + strand, within H281DRAFT_02909 at 519.107 kb on - strand at 519.121 kb on + strand at 519.232 kb on + strand, within H281DRAFT_02910 at 519.233 kb on - strand, within H281DRAFT_02910 at 519.559 kb on + strand at 519.560 kb on - strand at 519.577 kb on - strand at 519.761 kb on + strand at 519.761 kb on + strand at 519.762 kb on - strand at 520.351 kb on + strand at 520.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 518,835 + H281DRAFT_02909 0.57 -2.9 518,835 + H281DRAFT_02909 0.57 +0.4 519,107 - +0.7 519,121 + +0.2 519,232 + H281DRAFT_02910 0.28 +0.1 519,233 - H281DRAFT_02910 0.28 +0.9 519,559 + +1.2 519,560 - -0.1 519,577 - +0.2 519,761 + +0.3 519,761 + -0.4 519,762 - +0.3 520,351 + +0.1 520,352 - +0.3
Or see this region's nucleotide sequence