Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02141

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02140 and H281DRAFT_02141 are separated by 856 nucleotidesH281DRAFT_02141 and H281DRAFT_02142 are separated by 1 nucleotides H281DRAFT_02140: H281DRAFT_02140 - hypothetical protein, at 280,723 to 281,451 _02140 H281DRAFT_02141: H281DRAFT_02141 - hypothetical protein, at 282,308 to 282,736 _02141 H281DRAFT_02142: H281DRAFT_02142 - CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein, at 282,738 to 283,442 _02142 Position (kb) 282 283Strain fitness (log2 ratio) -1 0 1at 281.308 kb on + strand, within H281DRAFT_02140at 281.308 kb on + strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.365 kb on + strand, within H281DRAFT_02140at 281.421 kb on + strandat 281.438 kb on + strandat 281.452 kb on + strandat 281.452 kb on + strandat 281.452 kb on + strandat 281.453 kb on - strandat 281.597 kb on + strandat 281.598 kb on - strandat 281.598 kb on - strandat 281.637 kb on + strandat 281.638 kb on - strandat 281.659 kb on - strandat 281.747 kb on - strandat 281.828 kb on - strandat 281.854 kb on - strandat 281.854 kb on - strandat 281.942 kb on + strandat 282.008 kb on + strandat 282.008 kb on + strandat 282.008 kb on + strandat 282.009 kb on - strandat 282.015 kb on + strandat 282.082 kb on + strandat 282.149 kb on - strandat 282.176 kb on - strandat 282.176 kb on - strandat 282.184 kb on + strandat 282.185 kb on - strandat 282.430 kb on - strand, within H281DRAFT_02141at 282.464 kb on + strand, within H281DRAFT_02141at 282.465 kb on - strand, within H281DRAFT_02141at 282.732 kb on + strandat 282.758 kb on + strandat 282.758 kb on + strandat 282.758 kb on + strandat 282.759 kb on - strandat 282.759 kb on - strandat 282.762 kb on + strandat 282.762 kb on + strandat 282.762 kb on + strandat 282.763 kb on - strandat 282.763 kb on - strandat 282.763 kb on - strandat 282.763 kb on - strandat 282.763 kb on - strandat 282.764 kb on + strandat 282.764 kb on + strandat 282.764 kb on + strandat 282.870 kb on - strand, within H281DRAFT_02142at 282.940 kb on + strand, within H281DRAFT_02142at 282.940 kb on + strand, within H281DRAFT_02142at 282.940 kb on + strand, within H281DRAFT_02142at 282.941 kb on - strand, within H281DRAFT_02142at 283.017 kb on - strand, within H281DRAFT_02142at 283.031 kb on - strand, within H281DRAFT_02142at 283.039 kb on - strand, within H281DRAFT_02142at 283.129 kb on + strand, within H281DRAFT_02142at 283.129 kb on + strand, within H281DRAFT_02142at 283.167 kb on - strand, within H281DRAFT_02142at 283.167 kb on - strand, within H281DRAFT_02142at 283.167 kb on - strand, within H281DRAFT_02142at 283.167 kb on - strand, within H281DRAFT_02142at 283.167 kb on - strand, within H281DRAFT_02142at 283.352 kb on + strand, within H281DRAFT_02142at 283.352 kb on + strand, within H281DRAFT_02142at 283.353 kb on - strand, within H281DRAFT_02142at 283.476 kb on + strandat 283.480 kb on + strandat 283.514 kb on + strandat 283.605 kb on - strandat 283.638 kb on - strandat 283.638 kb on - strandat 283.642 kb on - strandat 283.642 kb on - strandat 283.642 kb on - strandat 283.642 kb on - strandat 283.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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281,308 + H281DRAFT_02140 0.80 +0.8
281,308 + H281DRAFT_02140 0.80 +1.6
281,309 - H281DRAFT_02140 0.80 -0.7
281,309 - H281DRAFT_02140 0.80 -0.3
281,309 - H281DRAFT_02140 0.80 +0.4
281,309 - H281DRAFT_02140 0.80 +0.2
281,309 - H281DRAFT_02140 0.80 +0.4
281,365 + H281DRAFT_02140 0.88 +0.3
281,421 + -0.2
281,438 + -0.2
281,452 + +0.1
281,452 + -0.2
281,452 + +0.6
281,453 - -0.1
281,597 + +0.1
281,598 - +0.3
281,598 - +0.4
281,637 + +0.0
281,638 - +0.3
281,659 - +0.2
281,747 - +0.0
281,828 - +0.2
281,854 - +0.2
281,854 - -0.3
281,942 + +0.3
282,008 + +0.4
282,008 + -1.2
282,008 + -0.2
282,009 - +0.2
282,015 + -0.2
282,082 + +0.1
282,149 - -0.3
282,176 - -0.5
282,176 - -0.3
282,184 + -0.1
282,185 - +0.6
282,430 - H281DRAFT_02141 0.28 +0.5
282,464 + H281DRAFT_02141 0.36 +0.1
282,465 - H281DRAFT_02141 0.37 +0.9
282,732 + +0.1
282,758 + +0.7
282,758 + +0.4
282,758 + -0.1
282,759 - -0.3
282,759 - -0.4
282,762 + +0.3
282,762 + +0.5
282,762 + +0.6
282,763 - +0.7
282,763 - +0.0
282,763 - -0.1
282,763 - -0.6
282,763 - -0.1
282,764 + +0.2
282,764 + +0.8
282,764 + +0.0
282,870 - H281DRAFT_02142 0.19 +0.1
282,940 + H281DRAFT_02142 0.29 +0.3
282,940 + H281DRAFT_02142 0.29 -0.6
282,940 + H281DRAFT_02142 0.29 -0.2
282,941 - H281DRAFT_02142 0.29 +0.1
283,017 - H281DRAFT_02142 0.40 +0.3
283,031 - H281DRAFT_02142 0.42 +0.6
283,039 - H281DRAFT_02142 0.43 -0.2
283,129 + H281DRAFT_02142 0.55 -0.8
283,129 + H281DRAFT_02142 0.55 +0.2
283,167 - H281DRAFT_02142 0.61 -0.1
283,167 - H281DRAFT_02142 0.61 -0.1
283,167 - H281DRAFT_02142 0.61 +0.3
283,167 - H281DRAFT_02142 0.61 -0.3
283,167 - H281DRAFT_02142 0.61 +0.7
283,352 + H281DRAFT_02142 0.87 +0.2
283,352 + H281DRAFT_02142 0.87 +0.5
283,353 - H281DRAFT_02142 0.87 +0.1
283,476 + +0.2
283,480 + -0.3
283,514 + -0.3
283,605 - +0.5
283,638 - +0.9
283,638 - -0.2
283,642 - +0.9
283,642 - +0.0
283,642 - +0.3
283,642 - -0.6
283,661 - -0.1

Or see this region's nucleotide sequence