Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05310

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05300 and PGA1_c05310 are separated by 18 nucleotidesPGA1_c05310 and PGA1_c05320 overlap by 4 nucleotides PGA1_c05300: PGA1_c05300 - putative glycosyl transferase, at 526,502 to 527,719 _c05300 PGA1_c05310: PGA1_c05310 - putative glycosyl transferase, at 527,738 to 528,580 _c05310 PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147 _c05320 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2 3at 526.752 kb on - strand, within PGA1_c05300at 526.759 kb on + strand, within PGA1_c05300at 526.925 kb on + strand, within PGA1_c05300at 526.932 kb on - strand, within PGA1_c05300at 526.939 kb on + strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 527.083 kb on - strand, within PGA1_c05300at 527.085 kb on + strand, within PGA1_c05300at 527.093 kb on + strand, within PGA1_c05300at 527.115 kb on + strand, within PGA1_c05300at 527.124 kb on - strand, within PGA1_c05300at 527.154 kb on - strand, within PGA1_c05300at 527.226 kb on - strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.258 kb on - strand, within PGA1_c05300at 527.277 kb on + strand, within PGA1_c05300at 527.320 kb on + strand, within PGA1_c05300at 527.371 kb on + strand, within PGA1_c05300at 527.376 kb on + strand, within PGA1_c05300at 527.379 kb on - strand, within PGA1_c05300at 527.379 kb on - strand, within PGA1_c05300at 527.384 kb on - strand, within PGA1_c05300at 527.534 kb on - strand, within PGA1_c05300at 527.578 kb on - strand, within PGA1_c05300at 527.590 kb on + strand, within PGA1_c05300at 527.618 kb on - strandat 527.636 kb on + strandat 527.686 kb on + strandat 527.729 kb on + strandat 527.731 kb on + strandat 527.827 kb on - strand, within PGA1_c05310at 527.850 kb on - strand, within PGA1_c05310at 527.862 kb on - strand, within PGA1_c05310at 527.866 kb on + strand, within PGA1_c05310at 527.876 kb on + strand, within PGA1_c05310at 527.891 kb on + strand, within PGA1_c05310at 527.953 kb on + strand, within PGA1_c05310at 528.030 kb on + strand, within PGA1_c05310at 528.085 kb on - strand, within PGA1_c05310at 528.096 kb on + strand, within PGA1_c05310at 528.122 kb on + strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.146 kb on + strand, within PGA1_c05310at 528.156 kb on + strand, within PGA1_c05310at 528.159 kb on - strand, within PGA1_c05310at 528.164 kb on - strand, within PGA1_c05310at 528.172 kb on + strand, within PGA1_c05310at 528.177 kb on - strand, within PGA1_c05310at 528.198 kb on + strand, within PGA1_c05310at 528.240 kb on + strand, within PGA1_c05310at 528.240 kb on - strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.257 kb on + strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.382 kb on + strand, within PGA1_c05310at 528.390 kb on + strand, within PGA1_c05310at 528.424 kb on + strand, within PGA1_c05310at 528.441 kb on + strand, within PGA1_c05310at 528.522 kb on + strandat 528.545 kb on - strandat 528.637 kb on + strandat 528.637 kb on + strandat 528.669 kb on - strandat 528.688 kb on - strandat 528.692 kb on + strandat 528.702 kb on + strandat 528.710 kb on - strandat 528.710 kb on - strandat 528.725 kb on + strandat 528.725 kb on + strandat 528.791 kb on - strandat 528.804 kb on + strandat 528.854 kb on - strand, within PGA1_c05320at 528.884 kb on + strand, within PGA1_c05320at 528.888 kb on + strand, within PGA1_c05320at 528.892 kb on - strand, within PGA1_c05320at 528.951 kb on + strand, within PGA1_c05320at 528.996 kb on + strand, within PGA1_c05320at 529.011 kb on - strand, within PGA1_c05320at 529.021 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.036 kb on - strand, within PGA1_c05320at 529.126 kb on - strand, within PGA1_c05320at 529.171 kb on - strand, within PGA1_c05320at 529.171 kb on - strand, within PGA1_c05320at 529.245 kb on - strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.298 kb on - strand, within PGA1_c05320at 529.303 kb on - strand, within PGA1_c05320at 529.303 kb on - strand, within PGA1_c05320at 529.336 kb on - strand, within PGA1_c05320at 529.336 kb on - strand, within PGA1_c05320at 529.385 kb on + strand, within PGA1_c05320at 529.439 kb on - strand, within PGA1_c05320at 529.454 kb on + strand, within PGA1_c05320at 529.457 kb on - strand, within PGA1_c05320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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526,752 - PGA1_c05300 0.21 -0.8
526,759 + PGA1_c05300 0.21 +0.4
526,925 + PGA1_c05300 0.35 +0.9
526,932 - PGA1_c05300 0.35 +0.3
526,939 + PGA1_c05300 0.36 +0.8
526,988 - PGA1_c05300 0.40 +0.4
526,988 - PGA1_c05300 0.40 +0.3
527,083 - PGA1_c05300 0.48 -1.2
527,085 + PGA1_c05300 0.48 -0.5
527,093 + PGA1_c05300 0.49 -0.5
527,115 + PGA1_c05300 0.50 +1.6
527,124 - PGA1_c05300 0.51 +0.3
527,154 - PGA1_c05300 0.54 +0.0
527,226 - PGA1_c05300 0.59 +2.2
527,250 + PGA1_c05300 0.61 -1.1
527,250 + PGA1_c05300 0.61 -0.7
527,258 - PGA1_c05300 0.62 -0.4
527,277 + PGA1_c05300 0.64 +0.5
527,320 + PGA1_c05300 0.67 +0.6
527,371 + PGA1_c05300 0.71 +1.5
527,376 + PGA1_c05300 0.72 -0.3
527,379 - PGA1_c05300 0.72 +0.6
527,379 - PGA1_c05300 0.72 -0.5
527,384 - PGA1_c05300 0.72 +0.8
527,534 - PGA1_c05300 0.85 +0.9
527,578 - PGA1_c05300 0.88 +0.3
527,590 + PGA1_c05300 0.89 +0.2
527,618 - +0.8
527,636 + +2.3
527,686 + -1.5
527,729 + +1.2
527,731 + +0.4
527,827 - PGA1_c05310 0.11 +0.4
527,850 - PGA1_c05310 0.13 +0.4
527,862 - PGA1_c05310 0.15 +0.5
527,866 + PGA1_c05310 0.15 +0.3
527,876 + PGA1_c05310 0.16 -0.4
527,891 + PGA1_c05310 0.18 +0.1
527,953 + PGA1_c05310 0.26 +0.8
528,030 + PGA1_c05310 0.35 -0.2
528,085 - PGA1_c05310 0.41 +1.3
528,096 + PGA1_c05310 0.42 +0.5
528,122 + PGA1_c05310 0.46 +0.9
528,132 - PGA1_c05310 0.47 +1.3
528,132 - PGA1_c05310 0.47 +0.0
528,146 + PGA1_c05310 0.48 +0.8
528,156 + PGA1_c05310 0.50 +0.4
528,159 - PGA1_c05310 0.50 -0.5
528,164 - PGA1_c05310 0.51 -0.7
528,172 + PGA1_c05310 0.51 +0.3
528,177 - PGA1_c05310 0.52 +0.5
528,198 + PGA1_c05310 0.55 +0.7
528,240 + PGA1_c05310 0.60 +0.4
528,240 - PGA1_c05310 0.60 -1.6
528,252 + PGA1_c05310 0.61 +1.3
528,252 + PGA1_c05310 0.61 +1.2
528,257 + PGA1_c05310 0.62 -0.2
528,260 - PGA1_c05310 0.62 -2.0
528,260 - PGA1_c05310 0.62 +0.9
528,260 - PGA1_c05310 0.62 +0.9
528,313 - PGA1_c05310 0.68 -0.2
528,313 - PGA1_c05310 0.68 +0.0
528,363 + PGA1_c05310 0.74 +1.1
528,363 + PGA1_c05310 0.74 +0.5
528,363 + PGA1_c05310 0.74 +0.8
528,363 + PGA1_c05310 0.74 +3.0
528,371 - PGA1_c05310 0.75 +0.1
528,371 - PGA1_c05310 0.75 -0.2
528,371 - PGA1_c05310 0.75 +0.0
528,382 + PGA1_c05310 0.76 +1.8
528,390 + PGA1_c05310 0.77 +0.1
528,424 + PGA1_c05310 0.81 -0.4
528,441 + PGA1_c05310 0.83 +0.3
528,522 + +0.4
528,545 - -0.5
528,637 + -1.0
528,637 + -1.5
528,669 - +0.5
528,688 - +0.7
528,692 + +0.8
528,702 + -0.9
528,710 - -0.7
528,710 - +1.0
528,725 + +0.3
528,725 + +1.0
528,791 - +0.2
528,804 + +0.3
528,854 - PGA1_c05320 0.11 -0.9
528,884 + PGA1_c05320 0.12 -0.2
528,888 + PGA1_c05320 0.12 +0.4
528,892 - PGA1_c05320 0.12 +1.7
528,951 + PGA1_c05320 0.15 -1.3
528,996 + PGA1_c05320 0.16 +2.0
529,011 - PGA1_c05320 0.17 -1.7
529,021 + PGA1_c05320 0.17 -0.2
529,028 + PGA1_c05320 0.18 +0.6
529,028 + PGA1_c05320 0.18 +0.0
529,028 + PGA1_c05320 0.18 +0.3
529,036 - PGA1_c05320 0.18 -0.2
529,126 - PGA1_c05320 0.21 -0.2
529,171 - PGA1_c05320 0.23 +0.1
529,171 - PGA1_c05320 0.23 -0.2
529,245 - PGA1_c05320 0.26 -0.2
529,295 + PGA1_c05320 0.28 +0.3
529,295 + PGA1_c05320 0.28 -0.6
529,295 + PGA1_c05320 0.28 +0.4
529,298 - PGA1_c05320 0.28 +0.6
529,303 - PGA1_c05320 0.28 +0.0
529,303 - PGA1_c05320 0.28 -1.4
529,336 - PGA1_c05320 0.30 +0.4
529,336 - PGA1_c05320 0.30 +0.9
529,385 + PGA1_c05320 0.31 +0.2
529,439 - PGA1_c05320 0.34 +0.4
529,454 + PGA1_c05320 0.34 -0.4
529,457 - PGA1_c05320 0.34 -1.0

Or see this region's nucleotide sequence