Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3935 and HP15_3936 are separated by 74 nucleotides HP15_3936 and HP15_3937 are separated by 180 nucleotides
HP15_3935: HP15_3935 - pyruvate carboxylase subunit B, at 4,163,125 to 4,164,924
_3935
HP15_3936: HP15_3936 - acyl-CoA dehydrogenase domain protein, at 4,164,999 to 4,166,168
_3936
HP15_3937: HP15_3937 - conserved hypothetical protein, membrane, at 4,166,349 to 4,167,713
_3937
Position (kb)
4164
4165
4166
4167 Strain fitness (log2 ratio)
-1
0
1
2 at 4164.016 kb on - strand, within HP15_3935 at 4164.032 kb on + strand, within HP15_3935 at 4164.041 kb on - strand, within HP15_3935 at 4164.326 kb on + strand, within HP15_3935 at 4164.334 kb on - strand, within HP15_3935 at 4164.389 kb on - strand, within HP15_3935 at 4164.413 kb on - strand, within HP15_3935 at 4164.642 kb on + strand, within HP15_3935 at 4164.684 kb on - strand, within HP15_3935 at 4164.689 kb on - strand, within HP15_3935 at 4164.759 kb on + strand at 4164.778 kb on + strand at 4164.786 kb on - strand at 4164.887 kb on - strand at 4164.892 kb on - strand at 4165.064 kb on + strand at 4165.175 kb on - strand, within HP15_3936 at 4165.231 kb on + strand, within HP15_3936 at 4165.358 kb on + strand, within HP15_3936 at 4165.366 kb on - strand, within HP15_3936 at 4165.366 kb on - strand, within HP15_3936 at 4165.396 kb on + strand, within HP15_3936 at 4165.468 kb on + strand, within HP15_3936 at 4165.622 kb on - strand, within HP15_3936 at 4165.763 kb on + strand, within HP15_3936 at 4165.771 kb on - strand, within HP15_3936 at 4165.771 kb on - strand, within HP15_3936 at 4165.911 kb on - strand, within HP15_3936 at 4165.973 kb on + strand, within HP15_3936 at 4166.015 kb on - strand, within HP15_3936 at 4166.121 kb on - strand at 4166.152 kb on - strand at 4166.228 kb on - strand at 4166.325 kb on + strand at 4166.325 kb on + strand at 4166.330 kb on + strand at 4166.333 kb on - strand at 4166.333 kb on - strand at 4166.333 kb on - strand at 4166.370 kb on - strand at 4166.422 kb on + strand at 4166.477 kb on + strand at 4166.487 kb on + strand, within HP15_3937 at 4166.598 kb on + strand, within HP15_3937 at 4166.598 kb on + strand, within HP15_3937 at 4166.606 kb on - strand, within HP15_3937 at 4166.606 kb on - strand, within HP15_3937 at 4166.637 kb on - strand, within HP15_3937 at 4166.680 kb on + strand, within HP15_3937 at 4166.680 kb on + strand, within HP15_3937 at 4166.711 kb on - strand, within HP15_3937 at 4166.716 kb on - strand, within HP15_3937 at 4166.716 kb on - strand, within HP15_3937 at 4166.719 kb on + strand, within HP15_3937 at 4166.729 kb on + strand, within HP15_3937 at 4166.737 kb on - strand, within HP15_3937 at 4166.794 kb on + strand, within HP15_3937 at 4166.861 kb on - strand, within HP15_3937 at 4166.861 kb on - strand, within HP15_3937 at 4166.883 kb on - strand, within HP15_3937 at 4167.038 kb on + strand, within HP15_3937 at 4167.046 kb on - strand, within HP15_3937 at 4167.082 kb on + strand, within HP15_3937 at 4167.148 kb on + strand, within HP15_3937 at 4167.156 kb on - strand, within HP15_3937
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 4,164,016 - HP15_3935 0.49 -0.1 4,164,032 + HP15_3935 0.50 +0.9 4,164,041 - HP15_3935 0.51 -1.1 4,164,326 + HP15_3935 0.67 -0.1 4,164,334 - HP15_3935 0.67 +0.4 4,164,389 - HP15_3935 0.70 -0.5 4,164,413 - HP15_3935 0.72 +0.9 4,164,642 + HP15_3935 0.84 +0.5 4,164,684 - HP15_3935 0.87 -0.2 4,164,689 - HP15_3935 0.87 +0.4 4,164,759 + -0.6 4,164,778 + +0.2 4,164,786 - +0.5 4,164,887 - +0.1 4,164,892 - -0.1 4,165,064 + +0.4 4,165,175 - HP15_3936 0.15 -0.4 4,165,231 + HP15_3936 0.20 +0.9 4,165,358 + HP15_3936 0.31 -0.1 4,165,366 - HP15_3936 0.31 +0.6 4,165,366 - HP15_3936 0.31 +1.8 4,165,396 + HP15_3936 0.34 +0.2 4,165,468 + HP15_3936 0.40 +0.3 4,165,622 - HP15_3936 0.53 +0.2 4,165,763 + HP15_3936 0.65 +0.5 4,165,771 - HP15_3936 0.66 +0.2 4,165,771 - HP15_3936 0.66 +0.6 4,165,911 - HP15_3936 0.78 -0.1 4,165,973 + HP15_3936 0.83 -0.1 4,166,015 - HP15_3936 0.87 +0.6 4,166,121 - -0.3 4,166,152 - +0.8 4,166,228 - +0.5 4,166,325 + +0.0 4,166,325 + -0.1 4,166,330 + -0.9 4,166,333 - -0.3 4,166,333 - -1.6 4,166,333 - +1.5 4,166,370 - +0.7 4,166,422 + +1.6 4,166,477 + +2.3 4,166,487 + HP15_3937 0.10 +0.2 4,166,598 + HP15_3937 0.18 +0.3 4,166,598 + HP15_3937 0.18 -1.4 4,166,606 - HP15_3937 0.19 +0.2 4,166,606 - HP15_3937 0.19 -0.2 4,166,637 - HP15_3937 0.21 +0.9 4,166,680 + HP15_3937 0.24 +0.6 4,166,680 + HP15_3937 0.24 -0.2 4,166,711 - HP15_3937 0.27 +1.9 4,166,716 - HP15_3937 0.27 +0.3 4,166,716 - HP15_3937 0.27 -0.4 4,166,719 + HP15_3937 0.27 +0.9 4,166,729 + HP15_3937 0.28 -0.3 4,166,737 - HP15_3937 0.28 +0.3 4,166,794 + HP15_3937 0.33 -0.4 4,166,861 - HP15_3937 0.38 +0.3 4,166,861 - HP15_3937 0.38 +0.1 4,166,883 - HP15_3937 0.39 -0.1 4,167,038 + HP15_3937 0.50 -0.4 4,167,046 - HP15_3937 0.51 +2.3 4,167,082 + HP15_3937 0.54 -0.7 4,167,148 + HP15_3937 0.59 -0.3 4,167,156 - HP15_3937 0.59 +0.5
Or see this region's nucleotide sequence