Strain Fitness in Marinobacter adhaerens HP15 around HP15_3936

Experiment: Tween 20

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3935 and HP15_3936 are separated by 74 nucleotidesHP15_3936 and HP15_3937 are separated by 180 nucleotides HP15_3935: HP15_3935 - pyruvate carboxylase subunit B, at 4,163,125 to 4,164,924 _3935 HP15_3936: HP15_3936 - acyl-CoA dehydrogenase domain protein, at 4,164,999 to 4,166,168 _3936 HP15_3937: HP15_3937 - conserved hypothetical protein, membrane, at 4,166,349 to 4,167,713 _3937 Position (kb) 4164 4165 4166 4167Strain fitness (log2 ratio) -1 0 1 2at 4164.016 kb on - strand, within HP15_3935at 4164.032 kb on + strand, within HP15_3935at 4164.041 kb on - strand, within HP15_3935at 4164.326 kb on + strand, within HP15_3935at 4164.334 kb on - strand, within HP15_3935at 4164.389 kb on - strand, within HP15_3935at 4164.413 kb on - strand, within HP15_3935at 4164.642 kb on + strand, within HP15_3935at 4164.684 kb on - strand, within HP15_3935at 4164.689 kb on - strand, within HP15_3935at 4164.759 kb on + strandat 4164.778 kb on + strandat 4164.786 kb on - strandat 4164.887 kb on - strandat 4164.892 kb on - strandat 4165.064 kb on + strandat 4165.175 kb on - strand, within HP15_3936at 4165.231 kb on + strand, within HP15_3936at 4165.358 kb on + strand, within HP15_3936at 4165.366 kb on - strand, within HP15_3936at 4165.366 kb on - strand, within HP15_3936at 4165.396 kb on + strand, within HP15_3936at 4165.468 kb on + strand, within HP15_3936at 4165.622 kb on - strand, within HP15_3936at 4165.763 kb on + strand, within HP15_3936at 4165.771 kb on - strand, within HP15_3936at 4165.771 kb on - strand, within HP15_3936at 4165.911 kb on - strand, within HP15_3936at 4165.973 kb on + strand, within HP15_3936at 4166.015 kb on - strand, within HP15_3936at 4166.121 kb on - strandat 4166.152 kb on - strandat 4166.228 kb on - strandat 4166.325 kb on + strandat 4166.325 kb on + strandat 4166.330 kb on + strandat 4166.333 kb on - strandat 4166.333 kb on - strandat 4166.333 kb on - strandat 4166.370 kb on - strandat 4166.422 kb on + strandat 4166.477 kb on + strandat 4166.487 kb on + strand, within HP15_3937at 4166.598 kb on + strand, within HP15_3937at 4166.598 kb on + strand, within HP15_3937at 4166.606 kb on - strand, within HP15_3937at 4166.606 kb on - strand, within HP15_3937at 4166.637 kb on - strand, within HP15_3937at 4166.680 kb on + strand, within HP15_3937at 4166.680 kb on + strand, within HP15_3937at 4166.711 kb on - strand, within HP15_3937at 4166.716 kb on - strand, within HP15_3937at 4166.716 kb on - strand, within HP15_3937at 4166.719 kb on + strand, within HP15_3937at 4166.729 kb on + strand, within HP15_3937at 4166.737 kb on - strand, within HP15_3937at 4166.794 kb on + strand, within HP15_3937at 4166.861 kb on - strand, within HP15_3937at 4166.861 kb on - strand, within HP15_3937at 4166.883 kb on - strand, within HP15_3937at 4167.038 kb on + strand, within HP15_3937at 4167.046 kb on - strand, within HP15_3937at 4167.082 kb on + strand, within HP15_3937at 4167.148 kb on + strand, within HP15_3937at 4167.156 kb on - strand, within HP15_3937

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
remove
4,164,016 - HP15_3935 0.49 -0.1
4,164,032 + HP15_3935 0.50 +0.9
4,164,041 - HP15_3935 0.51 -1.1
4,164,326 + HP15_3935 0.67 -0.1
4,164,334 - HP15_3935 0.67 +0.4
4,164,389 - HP15_3935 0.70 -0.5
4,164,413 - HP15_3935 0.72 +0.9
4,164,642 + HP15_3935 0.84 +0.5
4,164,684 - HP15_3935 0.87 -0.2
4,164,689 - HP15_3935 0.87 +0.4
4,164,759 + -0.6
4,164,778 + +0.2
4,164,786 - +0.5
4,164,887 - +0.1
4,164,892 - -0.1
4,165,064 + +0.4
4,165,175 - HP15_3936 0.15 -0.4
4,165,231 + HP15_3936 0.20 +0.9
4,165,358 + HP15_3936 0.31 -0.1
4,165,366 - HP15_3936 0.31 +0.6
4,165,366 - HP15_3936 0.31 +1.8
4,165,396 + HP15_3936 0.34 +0.2
4,165,468 + HP15_3936 0.40 +0.3
4,165,622 - HP15_3936 0.53 +0.2
4,165,763 + HP15_3936 0.65 +0.5
4,165,771 - HP15_3936 0.66 +0.2
4,165,771 - HP15_3936 0.66 +0.6
4,165,911 - HP15_3936 0.78 -0.1
4,165,973 + HP15_3936 0.83 -0.1
4,166,015 - HP15_3936 0.87 +0.6
4,166,121 - -0.3
4,166,152 - +0.8
4,166,228 - +0.5
4,166,325 + +0.0
4,166,325 + -0.1
4,166,330 + -0.9
4,166,333 - -0.3
4,166,333 - -1.6
4,166,333 - +1.5
4,166,370 - +0.7
4,166,422 + +1.6
4,166,477 + +2.3
4,166,487 + HP15_3937 0.10 +0.2
4,166,598 + HP15_3937 0.18 +0.3
4,166,598 + HP15_3937 0.18 -1.4
4,166,606 - HP15_3937 0.19 +0.2
4,166,606 - HP15_3937 0.19 -0.2
4,166,637 - HP15_3937 0.21 +0.9
4,166,680 + HP15_3937 0.24 +0.6
4,166,680 + HP15_3937 0.24 -0.2
4,166,711 - HP15_3937 0.27 +1.9
4,166,716 - HP15_3937 0.27 +0.3
4,166,716 - HP15_3937 0.27 -0.4
4,166,719 + HP15_3937 0.27 +0.9
4,166,729 + HP15_3937 0.28 -0.3
4,166,737 - HP15_3937 0.28 +0.3
4,166,794 + HP15_3937 0.33 -0.4
4,166,861 - HP15_3937 0.38 +0.3
4,166,861 - HP15_3937 0.38 +0.1
4,166,883 - HP15_3937 0.39 -0.1
4,167,038 + HP15_3937 0.50 -0.4
4,167,046 - HP15_3937 0.51 +2.3
4,167,082 + HP15_3937 0.54 -0.7
4,167,148 + HP15_3937 0.59 -0.3
4,167,156 - HP15_3937 0.59 +0.5

Or see this region's nucleotide sequence