Strain Fitness in Marinobacter adhaerens HP15 around HP15_3498

Experiment: Tween 20

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3497 and HP15_3498 are separated by 217 nucleotidesHP15_3498 and HP15_3499 are separated by 87 nucleotidesHP15_3499 and HP15_3500 are separated by 44 nucleotides HP15_3497: HP15_3497 - Hsp33-like chaperonin, at 3,681,028 to 3,681,882 _3497 HP15_3498: HP15_3498 - phosphoenolpyruvate carboxykinase (ATP), at 3,682,100 to 3,683,590 _3498 HP15_3499: HP15_3499 - conserved hypothetical protein, membrane, at 3,683,678 to 3,683,956 _3499 HP15_3500: HP15_3500 - conserved hypothetical protein, membrane, at 3,684,001 to 3,685,035 _3500 Position (kb) 3682 3683 3684Strain fitness (log2 ratio) -1 0 1at 3681.107 kb on + strandat 3681.145 kb on - strand, within HP15_3497at 3681.305 kb on + strand, within HP15_3497at 3681.313 kb on - strand, within HP15_3497at 3681.407 kb on + strand, within HP15_3497at 3681.415 kb on - strand, within HP15_3497at 3681.556 kb on - strand, within HP15_3497at 3681.568 kb on + strand, within HP15_3497at 3681.654 kb on + strand, within HP15_3497at 3681.678 kb on + strand, within HP15_3497at 3681.713 kb on + strand, within HP15_3497at 3681.721 kb on - strand, within HP15_3497at 3681.730 kb on - strand, within HP15_3497at 3681.738 kb on + strand, within HP15_3497at 3681.770 kb on - strand, within HP15_3497at 3683.584 kb on + strandat 3683.659 kb on - strandat 3683.669 kb on - strandat 3683.745 kb on - strand, within HP15_3499at 3683.766 kb on + strand, within HP15_3499at 3684.084 kb on + strandat 3684.086 kb on + strandat 3684.125 kb on + strand, within HP15_3500at 3684.200 kb on + strand, within HP15_3500at 3684.208 kb on - strand, within HP15_3500at 3684.208 kb on - strand, within HP15_3500at 3684.215 kb on + strand, within HP15_3500at 3684.229 kb on + strand, within HP15_3500at 3684.232 kb on - strand, within HP15_3500at 3684.234 kb on + strand, within HP15_3500at 3684.237 kb on - strand, within HP15_3500at 3684.237 kb on - strand, within HP15_3500at 3684.242 kb on - strand, within HP15_3500at 3684.386 kb on + strand, within HP15_3500at 3684.416 kb on - strand, within HP15_3500at 3684.436 kb on - strand, within HP15_3500at 3684.448 kb on + strand, within HP15_3500at 3684.453 kb on + strand, within HP15_3500at 3684.461 kb on - strand, within HP15_3500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
remove
3,681,107 + +0.4
3,681,145 - HP15_3497 0.14 +1.0
3,681,305 + HP15_3497 0.32 -0.6
3,681,313 - HP15_3497 0.33 -0.1
3,681,407 + HP15_3497 0.44 -0.4
3,681,415 - HP15_3497 0.45 +1.0
3,681,556 - HP15_3497 0.62 -1.2
3,681,568 + HP15_3497 0.63 +0.2
3,681,654 + HP15_3497 0.73 -0.3
3,681,678 + HP15_3497 0.76 -0.2
3,681,713 + HP15_3497 0.80 +0.1
3,681,721 - HP15_3497 0.81 +0.8
3,681,730 - HP15_3497 0.82 +1.0
3,681,738 + HP15_3497 0.83 +1.0
3,681,770 - HP15_3497 0.87 -1.0
3,683,584 + -0.0
3,683,659 - -0.3
3,683,669 - -0.3
3,683,745 - HP15_3499 0.24 -0.3
3,683,766 + HP15_3499 0.32 +0.7
3,684,084 + +0.2
3,684,086 + -0.2
3,684,125 + HP15_3500 0.12 -0.7
3,684,200 + HP15_3500 0.19 +1.0
3,684,208 - HP15_3500 0.20 -0.7
3,684,208 - HP15_3500 0.20 -1.2
3,684,215 + HP15_3500 0.21 -0.0
3,684,229 + HP15_3500 0.22 -0.0
3,684,232 - HP15_3500 0.22 -1.1
3,684,234 + HP15_3500 0.23 -0.2
3,684,237 - HP15_3500 0.23 +1.0
3,684,237 - HP15_3500 0.23 -1.6
3,684,242 - HP15_3500 0.23 +0.3
3,684,386 + HP15_3500 0.37 +0.6
3,684,416 - HP15_3500 0.40 +0.3
3,684,436 - HP15_3500 0.42 +0.7
3,684,448 + HP15_3500 0.43 -1.1
3,684,453 + HP15_3500 0.44 +0.2
3,684,461 - HP15_3500 0.44 -1.2

Or see this region's nucleotide sequence