Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31490

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31480 and PGA1_c31490 are separated by 78 nucleotidesPGA1_c31490 and PGA1_c31500 are separated by 174 nucleotides PGA1_c31480: PGA1_c31480 - aspartate-semialdehyde dehydrogenase Asd, at 3,289,361 to 3,290,383 _c31480 PGA1_c31490: PGA1_c31490 - transporter, MFS family, at 3,290,462 to 3,291,640 _c31490 PGA1_c31500: PGA1_c31500 - Protein of unknown function (DUF3095)., at 3,291,815 to 3,292,969 _c31500 Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3290.450 kb on + strandat 3290.455 kb on + strandat 3290.455 kb on + strandat 3290.455 kb on + strandat 3290.463 kb on - strandat 3290.463 kb on - strandat 3290.463 kb on - strandat 3290.463 kb on - strandat 3290.464 kb on + strandat 3290.474 kb on + strandat 3290.552 kb on + strandat 3290.552 kb on + strandat 3290.557 kb on + strandat 3290.560 kb on - strandat 3290.560 kb on - strandat 3290.592 kb on + strand, within PGA1_c31490at 3290.592 kb on - strand, within PGA1_c31490at 3290.697 kb on - strand, within PGA1_c31490at 3290.743 kb on - strand, within PGA1_c31490at 3290.755 kb on + strand, within PGA1_c31490at 3290.786 kb on + strand, within PGA1_c31490at 3290.786 kb on + strand, within PGA1_c31490at 3290.791 kb on + strand, within PGA1_c31490at 3290.796 kb on + strand, within PGA1_c31490at 3290.796 kb on + strand, within PGA1_c31490at 3290.799 kb on - strand, within PGA1_c31490at 3290.809 kb on - strand, within PGA1_c31490at 3290.809 kb on - strand, within PGA1_c31490at 3290.821 kb on + strand, within PGA1_c31490at 3290.822 kb on + strand, within PGA1_c31490at 3290.822 kb on + strand, within PGA1_c31490at 3290.822 kb on + strand, within PGA1_c31490at 3290.828 kb on + strand, within PGA1_c31490at 3290.909 kb on + strand, within PGA1_c31490at 3290.953 kb on + strand, within PGA1_c31490at 3291.019 kb on + strand, within PGA1_c31490at 3291.058 kb on - strand, within PGA1_c31490at 3291.064 kb on + strand, within PGA1_c31490at 3291.072 kb on - strand, within PGA1_c31490at 3291.104 kb on - strand, within PGA1_c31490at 3291.112 kb on + strand, within PGA1_c31490at 3291.125 kb on - strand, within PGA1_c31490at 3291.135 kb on + strand, within PGA1_c31490at 3291.135 kb on + strand, within PGA1_c31490at 3291.158 kb on - strand, within PGA1_c31490at 3291.174 kb on + strand, within PGA1_c31490at 3291.181 kb on - strand, within PGA1_c31490at 3291.181 kb on - strand, within PGA1_c31490at 3291.237 kb on - strand, within PGA1_c31490at 3291.250 kb on - strand, within PGA1_c31490at 3291.259 kb on + strand, within PGA1_c31490at 3291.274 kb on + strand, within PGA1_c31490at 3291.274 kb on + strand, within PGA1_c31490at 3291.318 kb on + strand, within PGA1_c31490at 3291.325 kb on + strand, within PGA1_c31490at 3291.356 kb on + strand, within PGA1_c31490at 3291.445 kb on - strand, within PGA1_c31490at 3291.457 kb on + strand, within PGA1_c31490at 3291.484 kb on - strand, within PGA1_c31490at 3291.484 kb on - strand, within PGA1_c31490at 3291.526 kb on + strandat 3291.526 kb on - strandat 3291.556 kb on + strandat 3291.558 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.561 kb on + strandat 3291.563 kb on + strandat 3291.564 kb on - strandat 3291.564 kb on - strandat 3291.564 kb on - strandat 3291.569 kb on - strandat 3291.569 kb on - strandat 3291.569 kb on - strandat 3291.569 kb on - strandat 3291.569 kb on - strandat 3291.569 kb on - strandat 3291.574 kb on + strandat 3291.647 kb on + strandat 3291.691 kb on + strandat 3291.709 kb on - strandat 3291.733 kb on - strandat 3291.743 kb on - strandat 3291.755 kb on + strandat 3291.782 kb on + strandat 3291.788 kb on + strandat 3291.789 kb on - strandat 3291.828 kb on + strandat 3291.836 kb on - strandat 3291.836 kb on - strandat 3291.842 kb on + strandat 3291.905 kb on + strandat 3291.914 kb on - strandat 3291.974 kb on + strand, within PGA1_c31500at 3292.012 kb on - strand, within PGA1_c31500at 3292.032 kb on - strand, within PGA1_c31500at 3292.063 kb on - strand, within PGA1_c31500at 3292.065 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.085 kb on - strand, within PGA1_c31500at 3292.085 kb on - strand, within PGA1_c31500at 3292.146 kb on + strand, within PGA1_c31500at 3292.146 kb on + strand, within PGA1_c31500at 3292.164 kb on - strand, within PGA1_c31500at 3292.168 kb on + strand, within PGA1_c31500at 3292.183 kb on + strand, within PGA1_c31500at 3292.191 kb on - strand, within PGA1_c31500at 3292.236 kb on + strand, within PGA1_c31500at 3292.252 kb on + strand, within PGA1_c31500at 3292.265 kb on + strand, within PGA1_c31500at 3292.265 kb on + strand, within PGA1_c31500at 3292.273 kb on - strand, within PGA1_c31500at 3292.310 kb on - strand, within PGA1_c31500at 3292.343 kb on - strand, within PGA1_c31500at 3292.349 kb on + strand, within PGA1_c31500at 3292.396 kb on - strand, within PGA1_c31500at 3292.421 kb on - strand, within PGA1_c31500at 3292.496 kb on + strand, within PGA1_c31500at 3292.544 kb on + strand, within PGA1_c31500at 3292.545 kb on + strand, within PGA1_c31500at 3292.545 kb on + strand, within PGA1_c31500at 3292.609 kb on - strand, within PGA1_c31500at 3292.631 kb on + strand, within PGA1_c31500at 3292.632 kb on + strand, within PGA1_c31500

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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3,290,450 + -0.0
3,290,455 + -1.7
3,290,455 + +1.3
3,290,455 + +0.8
3,290,463 - -2.1
3,290,463 - -1.0
3,290,463 - -1.3
3,290,463 - +0.1
3,290,464 + +0.5
3,290,474 + +0.6
3,290,552 + +1.5
3,290,552 + +0.1
3,290,557 + -1.7
3,290,560 - -0.4
3,290,560 - -0.7
3,290,592 + PGA1_c31490 0.11 +0.6
3,290,592 - PGA1_c31490 0.11 +0.7
3,290,697 - PGA1_c31490 0.20 -0.7
3,290,743 - PGA1_c31490 0.24 -0.0
3,290,755 + PGA1_c31490 0.25 -0.1
3,290,786 + PGA1_c31490 0.27 -0.7
3,290,786 + PGA1_c31490 0.27 -0.3
3,290,791 + PGA1_c31490 0.28 -1.2
3,290,796 + PGA1_c31490 0.28 +0.3
3,290,796 + PGA1_c31490 0.28 -0.4
3,290,799 - PGA1_c31490 0.29 +0.5
3,290,809 - PGA1_c31490 0.29 -0.2
3,290,809 - PGA1_c31490 0.29 -1.5
3,290,821 + PGA1_c31490 0.30 +0.5
3,290,822 + PGA1_c31490 0.31 -0.7
3,290,822 + PGA1_c31490 0.31 +0.5
3,290,822 + PGA1_c31490 0.31 -1.0
3,290,828 + PGA1_c31490 0.31 -0.1
3,290,909 + PGA1_c31490 0.38 -0.7
3,290,953 + PGA1_c31490 0.42 -1.5
3,291,019 + PGA1_c31490 0.47 -0.9
3,291,058 - PGA1_c31490 0.51 -0.8
3,291,064 + PGA1_c31490 0.51 -0.7
3,291,072 - PGA1_c31490 0.52 +0.0
3,291,104 - PGA1_c31490 0.54 -1.1
3,291,112 + PGA1_c31490 0.55 -1.0
3,291,125 - PGA1_c31490 0.56 +0.3
3,291,135 + PGA1_c31490 0.57 +0.0
3,291,135 + PGA1_c31490 0.57 +1.3
3,291,158 - PGA1_c31490 0.59 -3.2
3,291,174 + PGA1_c31490 0.60 +0.5
3,291,181 - PGA1_c31490 0.61 -1.7
3,291,181 - PGA1_c31490 0.61 -0.1
3,291,237 - PGA1_c31490 0.66 -1.2
3,291,250 - PGA1_c31490 0.67 -0.6
3,291,259 + PGA1_c31490 0.68 +0.1
3,291,274 + PGA1_c31490 0.69 +0.1
3,291,274 + PGA1_c31490 0.69 -0.4
3,291,318 + PGA1_c31490 0.73 +0.0
3,291,325 + PGA1_c31490 0.73 +0.3
3,291,356 + PGA1_c31490 0.76 -0.2
3,291,445 - PGA1_c31490 0.83 +1.1
3,291,457 + PGA1_c31490 0.84 +0.0
3,291,484 - PGA1_c31490 0.87 -0.4
3,291,484 - PGA1_c31490 0.87 +0.6
3,291,526 + +0.2
3,291,526 - +0.2
3,291,556 + -1.0
3,291,558 + -0.2
3,291,561 + -0.2
3,291,561 + +1.8
3,291,561 + +0.4
3,291,561 + -0.7
3,291,561 + +0.2
3,291,561 + -0.2
3,291,561 + +0.3
3,291,561 + -0.7
3,291,561 + -0.2
3,291,563 + -1.1
3,291,564 - +1.0
3,291,564 - +0.5
3,291,564 - -0.2
3,291,569 - +0.4
3,291,569 - -0.7
3,291,569 - -1.1
3,291,569 - +0.7
3,291,569 - +0.3
3,291,569 - +0.2
3,291,574 + -0.9
3,291,647 + +1.5
3,291,691 + +0.8
3,291,709 - +0.3
3,291,733 - +0.0
3,291,743 - -0.5
3,291,755 + -0.0
3,291,782 + +2.1
3,291,788 + +0.3
3,291,789 - -0.5
3,291,828 + +0.8
3,291,836 - -1.3
3,291,836 - +0.4
3,291,842 + +0.8
3,291,905 + +1.5
3,291,914 - +1.1
3,291,974 + PGA1_c31500 0.14 -1.4
3,292,012 - PGA1_c31500 0.17 +1.1
3,292,032 - PGA1_c31500 0.19 -0.6
3,292,063 - PGA1_c31500 0.21 -1.2
3,292,065 + PGA1_c31500 0.22 -0.3
3,292,077 + PGA1_c31500 0.23 +0.7
3,292,077 + PGA1_c31500 0.23 +0.3
3,292,077 + PGA1_c31500 0.23 +1.0
3,292,077 + PGA1_c31500 0.23 -1.8
3,292,077 + PGA1_c31500 0.23 +0.3
3,292,085 - PGA1_c31500 0.23 -0.5
3,292,085 - PGA1_c31500 0.23 +1.1
3,292,146 + PGA1_c31500 0.29 -0.0
3,292,146 + PGA1_c31500 0.29 -2.2
3,292,164 - PGA1_c31500 0.30 -1.0
3,292,168 + PGA1_c31500 0.31 -0.0
3,292,183 + PGA1_c31500 0.32 +0.3
3,292,191 - PGA1_c31500 0.33 -0.2
3,292,236 + PGA1_c31500 0.36 +2.4
3,292,252 + PGA1_c31500 0.38 +0.8
3,292,265 + PGA1_c31500 0.39 +0.2
3,292,265 + PGA1_c31500 0.39 -0.0
3,292,273 - PGA1_c31500 0.40 +0.1
3,292,310 - PGA1_c31500 0.43 +0.8
3,292,343 - PGA1_c31500 0.46 +0.1
3,292,349 + PGA1_c31500 0.46 -1.3
3,292,396 - PGA1_c31500 0.50 -1.2
3,292,421 - PGA1_c31500 0.52 -0.5
3,292,496 + PGA1_c31500 0.59 -0.1
3,292,544 + PGA1_c31500 0.63 +0.4
3,292,545 + PGA1_c31500 0.63 +1.4
3,292,545 + PGA1_c31500 0.63 +0.2
3,292,609 - PGA1_c31500 0.69 +0.2
3,292,631 + PGA1_c31500 0.71 -0.1
3,292,632 + PGA1_c31500 0.71 +0.6

Or see this region's nucleotide sequence