Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02740

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02720 and PGA1_c02730 are separated by 10 nucleotidesPGA1_c02730 and PGA1_c02740 are separated by 12 nucleotidesPGA1_c02740 and PGA1_c02750 overlap by 4 nucleotides PGA1_c02720: PGA1_c02720 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 260,515 to 261,396 _c02720 PGA1_c02730: PGA1_c02730 - sn-glycerol-3-phosphate transport system permease protein UgpE, at 261,407 to 262,288 _c02730 PGA1_c02740: PGA1_c02740 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 262,301 to 263,347 _c02740 PGA1_c02750: PGA1_c02750 - Metal-dependent hydrolase, at 263,344 to 264,345 _c02750 Position (kb) 262 263 264Strain fitness (log2 ratio) -2 -1 0 1 2at 261.325 kb on - strandat 261.385 kb on + strandat 261.393 kb on - strandat 261.407 kb on - strandat 261.411 kb on - strandat 261.504 kb on - strand, within PGA1_c02730at 261.514 kb on + strand, within PGA1_c02730at 261.531 kb on - strand, within PGA1_c02730at 261.548 kb on - strand, within PGA1_c02730at 261.572 kb on + strand, within PGA1_c02730at 261.575 kb on - strand, within PGA1_c02730at 261.582 kb on - strand, within PGA1_c02730at 261.582 kb on - strand, within PGA1_c02730at 261.596 kb on + strand, within PGA1_c02730at 261.627 kb on + strand, within PGA1_c02730at 261.634 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.665 kb on - strand, within PGA1_c02730at 261.665 kb on - strand, within PGA1_c02730at 261.667 kb on + strand, within PGA1_c02730at 261.670 kb on - strand, within PGA1_c02730at 261.693 kb on + strand, within PGA1_c02730at 261.701 kb on - strand, within PGA1_c02730at 261.739 kb on - strand, within PGA1_c02730at 261.807 kb on + strand, within PGA1_c02730at 261.829 kb on + strand, within PGA1_c02730at 261.839 kb on - strand, within PGA1_c02730at 261.867 kb on + strand, within PGA1_c02730at 261.955 kb on + strand, within PGA1_c02730at 261.963 kb on - strand, within PGA1_c02730at 261.963 kb on - strand, within PGA1_c02730at 262.021 kb on + strand, within PGA1_c02730at 262.029 kb on - strand, within PGA1_c02730at 262.029 kb on - strand, within PGA1_c02730at 262.029 kb on - strand, within PGA1_c02730at 262.096 kb on + strand, within PGA1_c02730at 262.130 kb on - strand, within PGA1_c02730at 262.134 kb on + strand, within PGA1_c02730at 262.155 kb on + strand, within PGA1_c02730at 262.155 kb on + strand, within PGA1_c02730at 262.156 kb on - strand, within PGA1_c02730at 262.163 kb on - strand, within PGA1_c02730at 262.163 kb on - strand, within PGA1_c02730at 262.163 kb on - strand, within PGA1_c02730at 262.216 kb on + strandat 262.222 kb on + strandat 262.332 kb on + strandat 262.341 kb on - strandat 262.347 kb on + strandat 262.348 kb on + strandat 262.377 kb on + strandat 262.377 kb on + strandat 262.385 kb on - strandat 262.455 kb on + strand, within PGA1_c02740at 262.455 kb on + strand, within PGA1_c02740at 262.463 kb on - strand, within PGA1_c02740at 262.501 kb on + strand, within PGA1_c02740at 262.617 kb on - strand, within PGA1_c02740at 262.643 kb on - strand, within PGA1_c02740at 262.721 kb on - strand, within PGA1_c02740at 262.740 kb on + strand, within PGA1_c02740at 262.799 kb on + strand, within PGA1_c02740at 262.828 kb on + strand, within PGA1_c02740at 262.833 kb on + strand, within PGA1_c02740at 262.838 kb on + strand, within PGA1_c02740at 262.848 kb on + strand, within PGA1_c02740at 262.849 kb on + strand, within PGA1_c02740at 262.883 kb on - strand, within PGA1_c02740at 262.945 kb on + strand, within PGA1_c02740at 262.945 kb on + strand, within PGA1_c02740at 262.953 kb on - strand, within PGA1_c02740at 263.007 kb on - strand, within PGA1_c02740at 263.109 kb on + strand, within PGA1_c02740at 263.172 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.241 kb on + strand, within PGA1_c02740at 263.241 kb on + strand, within PGA1_c02740at 263.273 kb on + strandat 263.361 kb on - strandat 263.371 kb on - strandat 263.384 kb on + strandat 263.397 kb on + strandat 263.402 kb on + strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.407 kb on + strandat 263.523 kb on + strand, within PGA1_c02750at 263.547 kb on + strand, within PGA1_c02750at 263.556 kb on + strand, within PGA1_c02750at 263.604 kb on + strand, within PGA1_c02750at 263.635 kb on + strand, within PGA1_c02750at 263.635 kb on + strand, within PGA1_c02750at 263.643 kb on - strand, within PGA1_c02750at 263.643 kb on - strand, within PGA1_c02750at 263.648 kb on + strand, within PGA1_c02750at 263.649 kb on - strand, within PGA1_c02750at 263.668 kb on + strand, within PGA1_c02750at 263.726 kb on - strand, within PGA1_c02750at 263.731 kb on - strand, within PGA1_c02750at 263.810 kb on + strand, within PGA1_c02750at 263.810 kb on + strand, within PGA1_c02750at 263.818 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.950 kb on + strand, within PGA1_c02750at 263.950 kb on + strand, within PGA1_c02750at 263.958 kb on - strand, within PGA1_c02750at 263.983 kb on + strand, within PGA1_c02750at 263.991 kb on - strand, within PGA1_c02750at 263.991 kb on - strand, within PGA1_c02750at 264.039 kb on + strand, within PGA1_c02750at 264.040 kb on + strand, within PGA1_c02750at 264.044 kb on + strand, within PGA1_c02750at 264.062 kb on - strand, within PGA1_c02750at 264.062 kb on - strand, within PGA1_c02750at 264.064 kb on + strand, within PGA1_c02750at 264.120 kb on + strand, within PGA1_c02750at 264.141 kb on + strand, within PGA1_c02750at 264.142 kb on + strand, within PGA1_c02750at 264.142 kb on + strand, within PGA1_c02750at 264.143 kb on + strand, within PGA1_c02750at 264.150 kb on - strand, within PGA1_c02750at 264.150 kb on - strand, within PGA1_c02750at 264.183 kb on + strand, within PGA1_c02750at 264.190 kb on - strand, within PGA1_c02750at 264.247 kb on - strandat 264.256 kb on + strandat 264.256 kb on + strandat 264.256 kb on + strandat 264.259 kb on - strandat 264.264 kb on - strandat 264.264 kb on - strandat 264.264 kb on - strandat 264.265 kb on + strandat 264.273 kb on + strandat 264.273 kb on - strandat 264.293 kb on + strandat 264.319 kb on + strandat 264.319 kb on + strandat 264.319 kb on + strandat 264.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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261,325 - +0.7
261,385 + +0.4
261,393 - -0.9
261,407 - -1.3
261,411 - +1.0
261,504 - PGA1_c02730 0.11 +0.6
261,514 + PGA1_c02730 0.12 -0.0
261,531 - PGA1_c02730 0.14 -0.4
261,548 - PGA1_c02730 0.16 +0.2
261,572 + PGA1_c02730 0.19 -1.0
261,575 - PGA1_c02730 0.19 -0.7
261,582 - PGA1_c02730 0.20 -1.0
261,582 - PGA1_c02730 0.20 -1.7
261,596 + PGA1_c02730 0.21 +0.2
261,627 + PGA1_c02730 0.25 -0.1
261,634 + PGA1_c02730 0.26 +0.5
261,657 + PGA1_c02730 0.28 +0.9
261,657 + PGA1_c02730 0.28 +0.6
261,657 + PGA1_c02730 0.28 -0.7
261,657 + PGA1_c02730 0.28 -1.1
261,657 + PGA1_c02730 0.28 -0.4
261,665 - PGA1_c02730 0.29 -0.3
261,665 - PGA1_c02730 0.29 -1.1
261,667 + PGA1_c02730 0.29 +0.3
261,670 - PGA1_c02730 0.30 -0.1
261,693 + PGA1_c02730 0.32 -1.7
261,701 - PGA1_c02730 0.33 -0.1
261,739 - PGA1_c02730 0.38 +0.1
261,807 + PGA1_c02730 0.45 -1.7
261,829 + PGA1_c02730 0.48 -0.4
261,839 - PGA1_c02730 0.49 +1.0
261,867 + PGA1_c02730 0.52 -1.5
261,955 + PGA1_c02730 0.62 +0.7
261,963 - PGA1_c02730 0.63 -0.8
261,963 - PGA1_c02730 0.63 +0.3
262,021 + PGA1_c02730 0.70 +0.0
262,029 - PGA1_c02730 0.71 +1.2
262,029 - PGA1_c02730 0.71 +1.1
262,029 - PGA1_c02730 0.71 +1.3
262,096 + PGA1_c02730 0.78 +0.3
262,130 - PGA1_c02730 0.82 +2.5
262,134 + PGA1_c02730 0.82 -0.3
262,155 + PGA1_c02730 0.85 -0.1
262,155 + PGA1_c02730 0.85 +0.4
262,156 - PGA1_c02730 0.85 +0.9
262,163 - PGA1_c02730 0.86 +1.1
262,163 - PGA1_c02730 0.86 +2.1
262,163 - PGA1_c02730 0.86 -0.1
262,216 + +0.1
262,222 + +0.5
262,332 + +1.5
262,341 - -0.1
262,347 + -0.7
262,348 + -1.6
262,377 + +2.1
262,377 + -0.4
262,385 - +0.7
262,455 + PGA1_c02740 0.15 +0.4
262,455 + PGA1_c02740 0.15 +1.3
262,463 - PGA1_c02740 0.15 +0.5
262,501 + PGA1_c02740 0.19 +1.9
262,617 - PGA1_c02740 0.30 +0.3
262,643 - PGA1_c02740 0.33 +1.1
262,721 - PGA1_c02740 0.40 +1.0
262,740 + PGA1_c02740 0.42 -0.5
262,799 + PGA1_c02740 0.48 +1.7
262,828 + PGA1_c02740 0.50 -2.0
262,833 + PGA1_c02740 0.51 +0.7
262,838 + PGA1_c02740 0.51 -0.3
262,848 + PGA1_c02740 0.52 +0.5
262,849 + PGA1_c02740 0.52 +0.3
262,883 - PGA1_c02740 0.56 +0.9
262,945 + PGA1_c02740 0.62 +0.6
262,945 + PGA1_c02740 0.62 -2.0
262,953 - PGA1_c02740 0.62 +1.0
263,007 - PGA1_c02740 0.67 +0.3
263,109 + PGA1_c02740 0.77 +0.4
263,172 + PGA1_c02740 0.83 -0.6
263,228 + PGA1_c02740 0.89 -0.3
263,228 + PGA1_c02740 0.89 +0.4
263,228 + PGA1_c02740 0.89 -0.7
263,241 + PGA1_c02740 0.90 +0.2
263,241 + PGA1_c02740 0.90 -1.0
263,273 + -1.6
263,361 - +0.9
263,371 - -1.5
263,384 + -0.2
263,397 + -0.6
263,402 + -1.7
263,405 - -2.1
263,405 - +0.0
263,405 - +0.8
263,405 - -0.6
263,405 - -1.4
263,405 - +0.9
263,407 + -0.4
263,523 + PGA1_c02750 0.18 +1.0
263,547 + PGA1_c02750 0.20 -1.6
263,556 + PGA1_c02750 0.21 -0.7
263,604 + PGA1_c02750 0.26 -0.3
263,635 + PGA1_c02750 0.29 +1.1
263,635 + PGA1_c02750 0.29 +0.5
263,643 - PGA1_c02750 0.30 +0.7
263,643 - PGA1_c02750 0.30 -0.1
263,648 + PGA1_c02750 0.30 +0.2
263,649 - PGA1_c02750 0.30 -0.1
263,668 + PGA1_c02750 0.32 -1.0
263,726 - PGA1_c02750 0.38 +0.4
263,731 - PGA1_c02750 0.39 +1.2
263,810 + PGA1_c02750 0.47 +0.4
263,810 + PGA1_c02750 0.47 -1.1
263,818 - PGA1_c02750 0.47 -1.1
263,823 - PGA1_c02750 0.48 -2.3
263,823 - PGA1_c02750 0.48 -0.9
263,823 - PGA1_c02750 0.48 -1.5
263,823 - PGA1_c02750 0.48 -1.7
263,950 + PGA1_c02750 0.60 +0.0
263,950 + PGA1_c02750 0.60 -1.4
263,958 - PGA1_c02750 0.61 +0.3
263,983 + PGA1_c02750 0.64 -0.7
263,991 - PGA1_c02750 0.65 +1.0
263,991 - PGA1_c02750 0.65 -0.3
264,039 + PGA1_c02750 0.69 +0.7
264,040 + PGA1_c02750 0.69 +0.2
264,044 + PGA1_c02750 0.70 +0.9
264,062 - PGA1_c02750 0.72 -0.8
264,062 - PGA1_c02750 0.72 -0.7
264,064 + PGA1_c02750 0.72 +2.0
264,120 + PGA1_c02750 0.77 +0.2
264,141 + PGA1_c02750 0.80 +1.2
264,142 + PGA1_c02750 0.80 -0.7
264,142 + PGA1_c02750 0.80 +1.0
264,143 + PGA1_c02750 0.80 -0.0
264,150 - PGA1_c02750 0.80 -0.4
264,150 - PGA1_c02750 0.80 -0.1
264,183 + PGA1_c02750 0.84 +1.0
264,190 - PGA1_c02750 0.84 -0.1
264,247 - +0.9
264,256 + -0.1
264,256 + +0.9
264,256 + -0.6
264,259 - +0.4
264,264 - +1.2
264,264 - -1.5
264,264 - -0.3
264,265 + +0.9
264,273 + -0.2
264,273 - -2.1
264,293 + -0.3
264,319 + -0.1
264,319 + -1.3
264,319 + -0.1
264,327 - +1.0

Or see this region's nucleotide sequence