Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00010 and PGA1_c00020 are separated by 309 nucleotides PGA1_c00020 and PGA1_c00030 are separated by 97 nucleotides
PGA1_c00010: PGA1_c00010 - chromosomal replication initiator protein DnaA, at 101 to 1,528
_c00010
PGA1_c00020: PGA1_c00020 - DNA polymerase III subunit beta, at 1,838 to 2,959
_c00020
PGA1_c00030: PGA1_c00030 - DNA replication and repair protein RecF, at 3,057 to 4,154
_c00030
Position (kb)
1
2
3 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1.512 kb on + strand at 1.515 kb on + strand at 1.626 kb on - strand at 1.679 kb on - strand at 1.744 kb on + strand at 1.750 kb on + strand at 2.953 kb on + strand at 2.953 kb on + strand at 2.953 kb on + strand at 2.961 kb on - strand at 2.963 kb on + strand at 2.969 kb on + strand at 2.990 kb on + strand at 2.990 kb on + strand at 2.998 kb on - strand at 2.998 kb on - strand at 3.053 kb on + strand at 3.070 kb on - strand at 3.073 kb on + strand at 3.073 kb on + strand at 3.093 kb on + strand at 3.131 kb on + strand at 3.248 kb on + strand, within PGA1_c00030 at 3.281 kb on + strand, within PGA1_c00030 at 3.289 kb on + strand, within PGA1_c00030 at 3.317 kb on - strand, within PGA1_c00030 at 3.342 kb on - strand, within PGA1_c00030 at 3.386 kb on - strand, within PGA1_c00030 at 3.510 kb on + strand, within PGA1_c00030 at 3.584 kb on - strand, within PGA1_c00030 at 3.640 kb on + strand, within PGA1_c00030 at 3.674 kb on - strand, within PGA1_c00030 at 3.707 kb on - strand, within PGA1_c00030 at 3.732 kb on + strand, within PGA1_c00030 at 3.750 kb on - strand, within PGA1_c00030 at 3.763 kb on + strand, within PGA1_c00030 at 3.799 kb on + strand, within PGA1_c00030 at 3.807 kb on - strand, within PGA1_c00030 at 3.807 kb on - strand, within PGA1_c00030 at 3.831 kb on - strand, within PGA1_c00030 at 3.848 kb on + strand, within PGA1_c00030 at 3.848 kb on + strand, within PGA1_c00030 at 3.897 kb on + strand, within PGA1_c00030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 1,512 + -2.6 1,515 + +1.4 1,626 - -2.3 1,679 - +0.6 1,744 + -0.8 1,750 + +0.4 2,953 + -0.4 2,953 + +0.5 2,953 + +0.8 2,961 - -1.1 2,963 + +0.2 2,969 + -1.6 2,990 + +0.4 2,990 + -0.1 2,998 - -1.3 2,998 - -2.4 3,053 + -0.5 3,070 - +0.1 3,073 + -1.1 3,073 + -1.6 3,093 + -2.7 3,131 + -1.3 3,248 + PGA1_c00030 0.17 -1.8 3,281 + PGA1_c00030 0.20 -2.7 3,289 + PGA1_c00030 0.21 -2.3 3,317 - PGA1_c00030 0.24 -1.8 3,342 - PGA1_c00030 0.26 -0.1 3,386 - PGA1_c00030 0.30 -2.3 3,510 + PGA1_c00030 0.41 -1.6 3,584 - PGA1_c00030 0.48 -1.5 3,640 + PGA1_c00030 0.53 -1.3 3,674 - PGA1_c00030 0.56 -1.9 3,707 - PGA1_c00030 0.59 -1.3 3,732 + PGA1_c00030 0.61 -4.2 3,750 - PGA1_c00030 0.63 -2.8 3,763 + PGA1_c00030 0.64 -2.8 3,799 + PGA1_c00030 0.68 -0.5 3,807 - PGA1_c00030 0.68 -1.7 3,807 - PGA1_c00030 0.68 -2.5 3,831 - PGA1_c00030 0.70 -1.0 3,848 + PGA1_c00030 0.72 +0.1 3,848 + PGA1_c00030 0.72 -2.8 3,897 + PGA1_c00030 0.77 -0.1
Or see this region's nucleotide sequence