Strain Fitness in Marinobacter adhaerens HP15 around HP15_1797

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1795 and HP15_1796 overlap by 8 nucleotidesHP15_1796 and HP15_1797 are separated by 74 nucleotidesHP15_1797 and HP15_1798 are separated by 20 nucleotides HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148 _1795 HP15_1796: HP15_1796 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 1,889,141 to 1,889,647 _1796 HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723 _1797 HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805 _1798 Position (kb) 1889 1890 1891Strain fitness (log2 ratio) -2 -1 0 1at 1889.200 kb on - strand, within HP15_1796at 1889.817 kb on - strandat 1889.931 kb on + strand, within HP15_1797at 1889.939 kb on - strand, within HP15_1797at 1889.958 kb on - strand, within HP15_1797at 1890.002 kb on + strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.161 kb on + strand, within HP15_1797at 1890.262 kb on - strand, within HP15_1797at 1890.342 kb on - strand, within HP15_1797at 1890.382 kb on + strand, within HP15_1797at 1890.548 kb on + strand, within HP15_1797at 1890.681 kb on - strandat 1890.689 kb on - strandat 1890.703 kb on - strandat 1890.910 kb on + strand, within HP15_1798at 1890.959 kb on + strand, within HP15_1798at 1890.995 kb on - strand, within HP15_1798at 1891.223 kb on - strand, within HP15_1798at 1891.311 kb on - strand, within HP15_1798at 1891.408 kb on + strand, within HP15_1798at 1891.413 kb on + strand, within HP15_1798at 1891.445 kb on + strand, within HP15_1798at 1891.479 kb on + strand, within HP15_1798at 1891.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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1,889,200 - HP15_1796 0.12 -2.6
1,889,817 - -0.3
1,889,931 + HP15_1797 0.21 +0.2
1,889,939 - HP15_1797 0.22 +0.7
1,889,958 - HP15_1797 0.24 +1.2
1,890,002 + HP15_1797 0.28 +0.7
1,890,010 - HP15_1797 0.29 -2.1
1,890,010 - HP15_1797 0.29 +0.2
1,890,161 + HP15_1797 0.44 -0.1
1,890,262 - HP15_1797 0.54 +0.6
1,890,342 - HP15_1797 0.62 +0.1
1,890,382 + HP15_1797 0.66 -1.0
1,890,548 + HP15_1797 0.82 +1.0
1,890,681 - +0.9
1,890,689 - -0.5
1,890,703 - +0.1
1,890,910 + HP15_1798 0.16 +0.6
1,890,959 + HP15_1798 0.20 -0.4
1,890,995 - HP15_1798 0.24 -0.2
1,891,223 - HP15_1798 0.45 -0.7
1,891,311 - HP15_1798 0.53 -0.0
1,891,408 + HP15_1798 0.63 -1.4
1,891,413 + HP15_1798 0.63 +0.3
1,891,445 + HP15_1798 0.66 +0.3
1,891,479 + HP15_1798 0.69 -0.0
1,891,704 + +0.2

Or see this region's nucleotide sequence