Strain Fitness in Marinobacter adhaerens HP15 around HP15_1783

Experiment: Tween 20

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1782 and HP15_1783 are separated by 29 nucleotidesHP15_1783 and HP15_tRNA34 are separated by 138 nucleotidesHP15_tRNA34 and HP15_1784 are separated by 211 nucleotides HP15_1782: HP15_1782 - ferrochelatase, at 1,876,554 to 1,877,663 _1782 HP15_1783: HP15_1783 - hypothetical protein, at 1,877,693 to 1,877,911 _1783 HP15_tRNA34: HP15_tRNA34 - tRNA-Ser, at 1,878,050 to 1,878,140 _tRNA34 HP15_1784: HP15_1784 - protein belonging to uncharacterized protein family UPF0005, at 1,878,352 to 1,879,050 _1784 Position (kb) 1877 1878Strain fitness (log2 ratio) -1 0 1at 1877.794 kb on + strand, within HP15_1783at 1877.802 kb on - strand, within HP15_1783at 1877.833 kb on - strand, within HP15_1783at 1877.920 kb on + strandat 1877.955 kb on - strandat 1878.220 kb on - strandat 1878.464 kb on + strand, within HP15_1784at 1878.464 kb on + strand, within HP15_1784at 1878.472 kb on - strand, within HP15_1784at 1878.742 kb on + strand, within HP15_1784at 1878.857 kb on + strand, within HP15_1784

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
remove
1,877,794 + HP15_1783 0.46 -0.6
1,877,802 - HP15_1783 0.50 -1.4
1,877,833 - HP15_1783 0.64 -0.9
1,877,920 + -0.2
1,877,955 - +0.4
1,878,220 - -1.6
1,878,464 + HP15_1784 0.16 -1.2
1,878,464 + HP15_1784 0.16 -0.0
1,878,472 - HP15_1784 0.17 -0.6
1,878,742 + HP15_1784 0.56 -0.8
1,878,857 + HP15_1784 0.72 -0.2

Or see this region's nucleotide sequence