Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1613 and HP15_1614 overlap by 8 nucleotides HP15_1614 and HP15_1615 are separated by 137 nucleotides
HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753
_1613
HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618
_1614
HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906
_1615
Position (kb)
1710
1711
1712 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1709.760 kb on - strand, within HP15_1613 at 1709.819 kb on + strand, within HP15_1613 at 1709.819 kb on - strand, within HP15_1613 at 1709.827 kb on - strand, within HP15_1613 at 1709.829 kb on - strand, within HP15_1613 at 1709.888 kb on + strand, within HP15_1613 at 1709.888 kb on - strand, within HP15_1613 at 1709.890 kb on + strand, within HP15_1613 at 1709.890 kb on + strand, within HP15_1613 at 1709.898 kb on - strand, within HP15_1613 at 1709.915 kb on - strand, within HP15_1613 at 1710.001 kb on - strand, within HP15_1613 at 1710.008 kb on + strand, within HP15_1613 at 1710.016 kb on - strand, within HP15_1613 at 1710.216 kb on + strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.301 kb on - strand, within HP15_1613 at 1710.418 kb on + strand, within HP15_1613 at 1710.423 kb on + strand, within HP15_1613 at 1710.648 kb on - strand at 1710.655 kb on - strand at 1710.751 kb on + strand at 1710.869 kb on + strand, within HP15_1614 at 1710.990 kb on + strand, within HP15_1614 at 1711.097 kb on + strand, within HP15_1614 at 1711.219 kb on + strand, within HP15_1614 at 1711.291 kb on - strand, within HP15_1614 at 1711.313 kb on + strand, within HP15_1614 at 1711.319 kb on - strand, within HP15_1614 at 1711.626 kb on - strand at 1711.717 kb on + strand at 1711.718 kb on - strand at 1711.735 kb on - strand at 1711.888 kb on - strand at 1711.938 kb on + strand at 1712.092 kb on + strand, within HP15_1615 at 1712.114 kb on - strand, within HP15_1615 at 1712.116 kb on + strand, within HP15_1615 at 1712.176 kb on + strand, within HP15_1615 at 1712.325 kb on + strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.365 kb on + strand, within HP15_1615 at 1712.465 kb on + strand, within HP15_1615 at 1712.612 kb on + strand, within HP15_1615
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 1,709,760 - HP15_1613 0.49 +0.0 1,709,819 + HP15_1613 0.52 +2.1 1,709,819 - HP15_1613 0.52 -1.3 1,709,827 - HP15_1613 0.52 -0.2 1,709,829 - HP15_1613 0.52 -0.6 1,709,888 + HP15_1613 0.55 -0.1 1,709,888 - HP15_1613 0.55 -0.4 1,709,890 + HP15_1613 0.56 +0.2 1,709,890 + HP15_1613 0.56 +0.9 1,709,898 - HP15_1613 0.56 +0.6 1,709,915 - HP15_1613 0.57 -0.1 1,710,001 - HP15_1613 0.61 +1.1 1,710,008 + HP15_1613 0.62 +0.3 1,710,016 - HP15_1613 0.62 +0.4 1,710,216 + HP15_1613 0.72 -0.0 1,710,291 - HP15_1613 0.76 +0.1 1,710,291 - HP15_1613 0.76 +0.4 1,710,291 - HP15_1613 0.76 -0.3 1,710,301 - HP15_1613 0.77 +0.1 1,710,418 + HP15_1613 0.83 +0.6 1,710,423 + HP15_1613 0.83 +1.6 1,710,648 - -0.4 1,710,655 - -0.4 1,710,751 + -0.0 1,710,869 + HP15_1614 0.14 -2.0 1,710,990 + HP15_1614 0.28 -0.4 1,711,097 + HP15_1614 0.40 -1.2 1,711,219 + HP15_1614 0.54 -0.2 1,711,291 - HP15_1614 0.62 -1.2 1,711,313 + HP15_1614 0.65 -1.4 1,711,319 - HP15_1614 0.66 -0.4 1,711,626 - +0.1 1,711,717 + -0.2 1,711,718 - +0.6 1,711,735 - +1.0 1,711,888 - +0.3 1,711,938 + -0.4 1,712,092 + HP15_1615 0.16 -0.5 1,712,114 - HP15_1615 0.17 +0.1 1,712,116 + HP15_1615 0.17 -0.2 1,712,176 + HP15_1615 0.20 -0.7 1,712,325 + HP15_1615 0.26 +0.3 1,712,333 - HP15_1615 0.27 +0.2 1,712,333 - HP15_1615 0.27 +1.6 1,712,333 - HP15_1615 0.27 -0.2 1,712,333 - HP15_1615 0.27 +1.3 1,712,365 + HP15_1615 0.28 -0.1 1,712,465 + HP15_1615 0.33 -2.0 1,712,612 + HP15_1615 0.40 -0.1
Or see this region's nucleotide sequence