Strain Fitness in Marinobacter adhaerens HP15 around HP15_1614

Experiment: Tween 20

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1613 and HP15_1614 overlap by 8 nucleotidesHP15_1614 and HP15_1615 are separated by 137 nucleotides HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753 _1613 HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618 _1614 HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906 _1615 Position (kb) 1710 1711 1712Strain fitness (log2 ratio) -2 -1 0 1 2at 1709.760 kb on - strand, within HP15_1613at 1709.819 kb on + strand, within HP15_1613at 1709.819 kb on - strand, within HP15_1613at 1709.827 kb on - strand, within HP15_1613at 1709.829 kb on - strand, within HP15_1613at 1709.888 kb on + strand, within HP15_1613at 1709.888 kb on - strand, within HP15_1613at 1709.890 kb on + strand, within HP15_1613at 1709.890 kb on + strand, within HP15_1613at 1709.898 kb on - strand, within HP15_1613at 1709.915 kb on - strand, within HP15_1613at 1710.001 kb on - strand, within HP15_1613at 1710.008 kb on + strand, within HP15_1613at 1710.016 kb on - strand, within HP15_1613at 1710.216 kb on + strand, within HP15_1613at 1710.291 kb on - strand, within HP15_1613at 1710.291 kb on - strand, within HP15_1613at 1710.291 kb on - strand, within HP15_1613at 1710.301 kb on - strand, within HP15_1613at 1710.418 kb on + strand, within HP15_1613at 1710.423 kb on + strand, within HP15_1613at 1710.648 kb on - strandat 1710.655 kb on - strandat 1710.751 kb on + strandat 1710.869 kb on + strand, within HP15_1614at 1710.990 kb on + strand, within HP15_1614at 1711.097 kb on + strand, within HP15_1614at 1711.219 kb on + strand, within HP15_1614at 1711.291 kb on - strand, within HP15_1614at 1711.313 kb on + strand, within HP15_1614at 1711.319 kb on - strand, within HP15_1614at 1711.626 kb on - strandat 1711.717 kb on + strandat 1711.718 kb on - strandat 1711.735 kb on - strandat 1711.888 kb on - strandat 1711.938 kb on + strandat 1712.092 kb on + strand, within HP15_1615at 1712.114 kb on - strand, within HP15_1615at 1712.116 kb on + strand, within HP15_1615at 1712.176 kb on + strand, within HP15_1615at 1712.325 kb on + strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.333 kb on - strand, within HP15_1615at 1712.365 kb on + strand, within HP15_1615at 1712.465 kb on + strand, within HP15_1615at 1712.612 kb on + strand, within HP15_1615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
remove
1,709,760 - HP15_1613 0.49 +0.0
1,709,819 + HP15_1613 0.52 +2.1
1,709,819 - HP15_1613 0.52 -1.3
1,709,827 - HP15_1613 0.52 -0.2
1,709,829 - HP15_1613 0.52 -0.6
1,709,888 + HP15_1613 0.55 -0.1
1,709,888 - HP15_1613 0.55 -0.4
1,709,890 + HP15_1613 0.56 +0.2
1,709,890 + HP15_1613 0.56 +0.9
1,709,898 - HP15_1613 0.56 +0.6
1,709,915 - HP15_1613 0.57 -0.1
1,710,001 - HP15_1613 0.61 +1.1
1,710,008 + HP15_1613 0.62 +0.3
1,710,016 - HP15_1613 0.62 +0.4
1,710,216 + HP15_1613 0.72 -0.0
1,710,291 - HP15_1613 0.76 +0.1
1,710,291 - HP15_1613 0.76 +0.4
1,710,291 - HP15_1613 0.76 -0.3
1,710,301 - HP15_1613 0.77 +0.1
1,710,418 + HP15_1613 0.83 +0.6
1,710,423 + HP15_1613 0.83 +1.6
1,710,648 - -0.4
1,710,655 - -0.4
1,710,751 + -0.0
1,710,869 + HP15_1614 0.14 -2.0
1,710,990 + HP15_1614 0.28 -0.4
1,711,097 + HP15_1614 0.40 -1.2
1,711,219 + HP15_1614 0.54 -0.2
1,711,291 - HP15_1614 0.62 -1.2
1,711,313 + HP15_1614 0.65 -1.4
1,711,319 - HP15_1614 0.66 -0.4
1,711,626 - +0.1
1,711,717 + -0.2
1,711,718 - +0.6
1,711,735 - +1.0
1,711,888 - +0.3
1,711,938 + -0.4
1,712,092 + HP15_1615 0.16 -0.5
1,712,114 - HP15_1615 0.17 +0.1
1,712,116 + HP15_1615 0.17 -0.2
1,712,176 + HP15_1615 0.20 -0.7
1,712,325 + HP15_1615 0.26 +0.3
1,712,333 - HP15_1615 0.27 +0.2
1,712,333 - HP15_1615 0.27 +1.6
1,712,333 - HP15_1615 0.27 -0.2
1,712,333 - HP15_1615 0.27 +1.3
1,712,365 + HP15_1615 0.28 -0.1
1,712,465 + HP15_1615 0.33 -2.0
1,712,612 + HP15_1615 0.40 -0.1

Or see this region's nucleotide sequence