Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15910 and PGA1_c15920 overlap by 4 nucleotides PGA1_c15920 and PGA1_c15930 are separated by 6 nucleotides PGA1_c15930 and PGA1_c15940 overlap by 1 nucleotides
PGA1_c15910: PGA1_c15910 - putative branched-chain amino acid transport ATP-binding protein, at 1,650,844 to 1,651,632
_c15910
PGA1_c15920: PGA1_c15920 - putative branched-chain amino acid transport ATP-binding protein, at 1,651,629 to 1,652,459
_c15920
PGA1_c15930: PGA1_c15930 - hypothetical protein, at 1,652,466 to 1,652,954
_c15930
PGA1_c15940: PGA1_c15940 - putative branched-chain amino acid transport system, permease protein, at 1,652,954 to 1,653,964
_c15940
Position (kb)
1652
1653 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1651.496 kb on - strand, within PGA1_c15910 at 1651.549 kb on - strand, within PGA1_c15910 at 1651.688 kb on + strand at 1651.726 kb on - strand, within PGA1_c15920 at 1651.797 kb on + strand, within PGA1_c15920 at 1651.868 kb on - strand, within PGA1_c15920 at 1651.930 kb on - strand, within PGA1_c15920 at 1651.968 kb on + strand, within PGA1_c15920 at 1651.976 kb on - strand, within PGA1_c15920 at 1651.990 kb on - strand, within PGA1_c15920 at 1652.004 kb on + strand, within PGA1_c15920 at 1652.012 kb on - strand, within PGA1_c15920 at 1652.055 kb on - strand, within PGA1_c15920 at 1652.109 kb on - strand, within PGA1_c15920 at 1652.148 kb on + strand, within PGA1_c15920 at 1652.184 kb on + strand, within PGA1_c15920 at 1652.373 kb on - strand, within PGA1_c15920 at 1652.425 kb on + strand at 1652.470 kb on - strand at 1652.521 kb on + strand, within PGA1_c15930 at 1652.521 kb on - strand, within PGA1_c15930 at 1652.529 kb on - strand, within PGA1_c15930 at 1652.646 kb on + strand, within PGA1_c15930 at 1652.654 kb on - strand, within PGA1_c15930 at 1652.724 kb on + strand, within PGA1_c15930 at 1652.748 kb on + strand, within PGA1_c15930 at 1652.836 kb on + strand, within PGA1_c15930 at 1652.906 kb on + strand at 1652.912 kb on - strand at 1652.927 kb on - strand at 1652.978 kb on - strand at 1652.978 kb on - strand at 1653.020 kb on + strand at 1653.162 kb on + strand, within PGA1_c15940 at 1653.170 kb on - strand, within PGA1_c15940 at 1653.172 kb on + strand, within PGA1_c15940 at 1653.196 kb on + strand, within PGA1_c15940 at 1653.204 kb on - strand, within PGA1_c15940 at 1653.221 kb on - strand, within PGA1_c15940 at 1653.224 kb on - strand, within PGA1_c15940 at 1653.256 kb on + strand, within PGA1_c15940 at 1653.256 kb on + strand, within PGA1_c15940 at 1653.256 kb on + strand, within PGA1_c15940 at 1653.256 kb on + strand, within PGA1_c15940 at 1653.264 kb on - strand, within PGA1_c15940 at 1653.264 kb on - strand, within PGA1_c15940 at 1653.311 kb on - strand, within PGA1_c15940 at 1653.338 kb on - strand, within PGA1_c15940 at 1653.421 kb on - strand, within PGA1_c15940 at 1653.457 kb on + strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.465 kb on - strand, within PGA1_c15940 at 1653.467 kb on - strand, within PGA1_c15940 at 1653.502 kb on - strand, within PGA1_c15940 at 1653.502 kb on - strand, within PGA1_c15940 at 1653.541 kb on + strand, within PGA1_c15940 at 1653.594 kb on + strand, within PGA1_c15940 at 1653.604 kb on - strand, within PGA1_c15940 at 1653.637 kb on - strand, within PGA1_c15940 at 1653.637 kb on - strand, within PGA1_c15940 at 1653.649 kb on + strand, within PGA1_c15940 at 1653.820 kb on + strand, within PGA1_c15940 at 1653.820 kb on + strand, within PGA1_c15940 at 1653.820 kb on + strand, within PGA1_c15940 at 1653.820 kb on + strand, within PGA1_c15940 at 1653.828 kb on - strand, within PGA1_c15940 at 1653.828 kb on - strand, within PGA1_c15940 at 1653.828 kb on - strand, within PGA1_c15940 at 1653.828 kb on - strand, within PGA1_c15940 at 1653.855 kb on + strand, within PGA1_c15940 at 1653.898 kb on - strand at 1653.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 1,651,496 - PGA1_c15910 0.83 -0.2 1,651,549 - PGA1_c15910 0.89 +0.4 1,651,688 + +0.2 1,651,726 - PGA1_c15920 0.12 +0.2 1,651,797 + PGA1_c15920 0.20 -0.2 1,651,868 - PGA1_c15920 0.29 -1.6 1,651,930 - PGA1_c15920 0.36 -1.0 1,651,968 + PGA1_c15920 0.41 +0.8 1,651,976 - PGA1_c15920 0.42 +0.5 1,651,990 - PGA1_c15920 0.43 -0.7 1,652,004 + PGA1_c15920 0.45 -0.5 1,652,012 - PGA1_c15920 0.46 +0.1 1,652,055 - PGA1_c15920 0.51 +0.3 1,652,109 - PGA1_c15920 0.58 -0.6 1,652,148 + PGA1_c15920 0.62 +0.1 1,652,184 + PGA1_c15920 0.67 -1.2 1,652,373 - PGA1_c15920 0.90 -0.2 1,652,425 + +0.1 1,652,470 - -0.2 1,652,521 + PGA1_c15930 0.11 -0.6 1,652,521 - PGA1_c15930 0.11 -0.8 1,652,529 - PGA1_c15930 0.13 -0.8 1,652,646 + PGA1_c15930 0.37 -1.7 1,652,654 - PGA1_c15930 0.38 -2.0 1,652,724 + PGA1_c15930 0.53 -1.1 1,652,748 + PGA1_c15930 0.58 -1.3 1,652,836 + PGA1_c15930 0.76 +0.5 1,652,906 + +0.2 1,652,912 - +1.5 1,652,927 - -1.6 1,652,978 - -0.5 1,652,978 - -0.7 1,653,020 + +0.2 1,653,162 + PGA1_c15940 0.21 +1.0 1,653,170 - PGA1_c15940 0.21 +0.1 1,653,172 + PGA1_c15940 0.22 -1.7 1,653,196 + PGA1_c15940 0.24 +0.1 1,653,204 - PGA1_c15940 0.25 +0.2 1,653,221 - PGA1_c15940 0.26 +1.0 1,653,224 - PGA1_c15940 0.27 +0.8 1,653,256 + PGA1_c15940 0.30 -1.2 1,653,256 + PGA1_c15940 0.30 +0.1 1,653,256 + PGA1_c15940 0.30 +0.2 1,653,256 + PGA1_c15940 0.30 +0.2 1,653,264 - PGA1_c15940 0.31 +1.8 1,653,264 - PGA1_c15940 0.31 -1.2 1,653,311 - PGA1_c15940 0.35 +0.8 1,653,338 - PGA1_c15940 0.38 +0.7 1,653,421 - PGA1_c15940 0.46 +0.4 1,653,457 + PGA1_c15940 0.50 +0.8 1,653,465 - PGA1_c15940 0.51 +0.8 1,653,465 - PGA1_c15940 0.51 -1.4 1,653,465 - PGA1_c15940 0.51 +0.4 1,653,465 - PGA1_c15940 0.51 -1.5 1,653,465 - PGA1_c15940 0.51 -0.7 1,653,465 - PGA1_c15940 0.51 +0.0 1,653,465 - PGA1_c15940 0.51 -2.2 1,653,467 - PGA1_c15940 0.51 -1.1 1,653,502 - PGA1_c15940 0.54 -0.8 1,653,502 - PGA1_c15940 0.54 -0.4 1,653,541 + PGA1_c15940 0.58 +0.0 1,653,594 + PGA1_c15940 0.63 +0.5 1,653,604 - PGA1_c15940 0.64 -2.8 1,653,637 - PGA1_c15940 0.68 -0.8 1,653,637 - PGA1_c15940 0.68 -1.1 1,653,649 + PGA1_c15940 0.69 -0.3 1,653,820 + PGA1_c15940 0.86 +1.6 1,653,820 + PGA1_c15940 0.86 -0.4 1,653,820 + PGA1_c15940 0.86 +1.8 1,653,820 + PGA1_c15940 0.86 -0.4 1,653,828 - PGA1_c15940 0.86 +0.9 1,653,828 - PGA1_c15940 0.86 +0.4 1,653,828 - PGA1_c15940 0.86 -1.1 1,653,828 - PGA1_c15940 0.86 -1.0 1,653,855 + PGA1_c15940 0.89 -0.2 1,653,898 - +1.0 1,653,906 + -0.9
Or see this region's nucleotide sequence