Strain Fitness in Marinobacter adhaerens HP15 around HP15_115

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_114 and HP15_115 are separated by 14 nucleotidesHP15_115 and HP15_116 are separated by 87 nucleotides HP15_114: HP15_114 - efflux transporter, RND family, MFP subunit, at 121,563 to 122,810 _114 HP15_115: HP15_115 - heavy metal efflux pump, CzcA family, at 122,825 to 126,022 _115 HP15_116: HP15_116 - two-component sensor, at 126,110 to 127,477 _116 Position (kb) 122 123 124 125 126 127Strain fitness (log2 ratio) -1 0 1 2at 121.865 kb on - strand, within HP15_114at 121.867 kb on - strand, within HP15_114at 121.927 kb on + strand, within HP15_114at 121.940 kb on + strand, within HP15_114at 121.940 kb on + strand, within HP15_114at 121.984 kb on - strand, within HP15_114at 122.012 kb on + strand, within HP15_114at 122.050 kb on - strand, within HP15_114at 122.100 kb on - strand, within HP15_114at 122.109 kb on - strand, within HP15_114at 122.131 kb on - strand, within HP15_114at 122.131 kb on - strand, within HP15_114at 122.218 kb on - strand, within HP15_114at 122.222 kb on + strand, within HP15_114at 122.248 kb on + strand, within HP15_114at 122.253 kb on + strand, within HP15_114at 122.253 kb on + strand, within HP15_114at 122.268 kb on + strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.276 kb on - strand, within HP15_114at 122.276 kb on - strand, within HP15_114at 122.276 kb on - strand, within HP15_114at 122.307 kb on - strand, within HP15_114at 122.493 kb on + strand, within HP15_114at 122.510 kb on - strand, within HP15_114at 122.520 kb on - strand, within HP15_114at 122.581 kb on + strand, within HP15_114at 122.607 kb on - strand, within HP15_114at 122.615 kb on + strand, within HP15_114at 122.638 kb on + strand, within HP15_114at 122.642 kb on - strand, within HP15_114at 122.646 kb on - strand, within HP15_114at 122.646 kb on - strand, within HP15_114at 122.660 kb on + strand, within HP15_114at 122.668 kb on - strand, within HP15_114at 122.788 kb on + strandat 122.788 kb on + strandat 122.852 kb on + strandat 122.860 kb on - strandat 122.948 kb on - strandat 122.956 kb on + strandat 122.981 kb on - strandat 123.067 kb on + strandat 123.099 kb on + strandat 123.171 kb on - strand, within HP15_115at 123.171 kb on - strand, within HP15_115at 123.195 kb on + strand, within HP15_115at 123.195 kb on + strand, within HP15_115at 123.253 kb on - strand, within HP15_115at 123.327 kb on - strand, within HP15_115at 123.349 kb on - strand, within HP15_115at 123.362 kb on - strand, within HP15_115at 123.388 kb on + strand, within HP15_115at 123.504 kb on + strand, within HP15_115at 123.504 kb on + strand, within HP15_115at 123.563 kb on + strand, within HP15_115at 123.566 kb on - strand, within HP15_115at 123.571 kb on - strand, within HP15_115at 123.577 kb on + strand, within HP15_115at 123.606 kb on + strand, within HP15_115at 123.967 kb on + strand, within HP15_115at 123.998 kb on - strand, within HP15_115at 124.003 kb on - strand, within HP15_115at 124.012 kb on - strand, within HP15_115at 124.083 kb on + strand, within HP15_115at 124.083 kb on + strand, within HP15_115at 124.173 kb on + strand, within HP15_115at 124.210 kb on - strand, within HP15_115at 124.295 kb on + strand, within HP15_115at 124.295 kb on + strand, within HP15_115at 124.295 kb on + strand, within HP15_115at 124.314 kb on - strand, within HP15_115at 124.330 kb on + strand, within HP15_115at 124.338 kb on - strand, within HP15_115at 124.355 kb on + strand, within HP15_115at 124.358 kb on - strand, within HP15_115at 124.363 kb on - strand, within HP15_115at 124.455 kb on + strand, within HP15_115at 124.487 kb on + strand, within HP15_115at 124.488 kb on + strand, within HP15_115at 124.495 kb on - strand, within HP15_115at 124.495 kb on - strand, within HP15_115at 124.495 kb on - strand, within HP15_115at 124.559 kb on - strand, within HP15_115at 124.611 kb on + strand, within HP15_115at 124.628 kb on + strand, within HP15_115at 124.647 kb on + strand, within HP15_115at 124.678 kb on + strand, within HP15_115at 124.723 kb on + strand, within HP15_115at 124.723 kb on + strand, within HP15_115at 124.723 kb on + strand, within HP15_115at 124.723 kb on + strand, within HP15_115at 124.723 kb on + strand, within HP15_115at 124.731 kb on - strand, within HP15_115at 124.731 kb on - strand, within HP15_115at 124.731 kb on - strand, within HP15_115at 124.731 kb on - strand, within HP15_115at 125.017 kb on + strand, within HP15_115at 125.022 kb on + strand, within HP15_115at 125.027 kb on + strand, within HP15_115at 125.156 kb on + strand, within HP15_115at 125.160 kb on - strand, within HP15_115at 125.164 kb on - strand, within HP15_115at 125.193 kb on + strand, within HP15_115at 125.208 kb on + strand, within HP15_115at 125.224 kb on + strand, within HP15_115at 125.292 kb on + strand, within HP15_115at 125.293 kb on + strand, within HP15_115at 125.301 kb on - strand, within HP15_115at 125.368 kb on - strand, within HP15_115at 125.390 kb on + strand, within HP15_115at 125.390 kb on + strand, within HP15_115at 125.391 kb on - strand, within HP15_115at 125.398 kb on - strand, within HP15_115at 125.426 kb on + strand, within HP15_115at 125.510 kb on + strand, within HP15_115at 125.651 kb on + strand, within HP15_115at 125.715 kb on - strandat 125.794 kb on + strandat 125.794 kb on + strandat 125.802 kb on - strandat 125.825 kb on + strandat 125.845 kb on - strandat 125.906 kb on + strandat 125.906 kb on + strandat 125.921 kb on + strandat 125.928 kb on - strandat 126.067 kb on - strandat 126.168 kb on + strandat 126.212 kb on + strandat 126.271 kb on + strand, within HP15_116at 126.291 kb on - strand, within HP15_116at 126.316 kb on + strand, within HP15_116at 126.535 kb on + strand, within HP15_116at 126.542 kb on + strand, within HP15_116at 126.543 kb on - strand, within HP15_116at 126.798 kb on + strand, within HP15_116at 126.824 kb on + strand, within HP15_116at 126.855 kb on + strand, within HP15_116at 126.867 kb on + strand, within HP15_116at 126.867 kb on + strand, within HP15_116at 126.914 kb on + strand, within HP15_116at 126.920 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.975 kb on + strand, within HP15_116at 126.975 kb on + strand, within HP15_116

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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121,865 - HP15_114 0.24 -0.0
121,867 - HP15_114 0.24 -0.4
121,927 + HP15_114 0.29 +0.6
121,940 + HP15_114 0.30 +0.4
121,940 + HP15_114 0.30 +0.2
121,984 - HP15_114 0.34 -0.2
122,012 + HP15_114 0.36 +1.0
122,050 - HP15_114 0.39 -0.4
122,100 - HP15_114 0.43 -1.5
122,109 - HP15_114 0.44 +1.5
122,131 - HP15_114 0.46 +1.0
122,131 - HP15_114 0.46 -0.4
122,218 - HP15_114 0.52 +0.4
122,222 + HP15_114 0.53 +0.0
122,248 + HP15_114 0.55 -0.4
122,253 + HP15_114 0.55 -0.1
122,253 + HP15_114 0.55 -0.8
122,268 + HP15_114 0.56 +0.8
122,271 - HP15_114 0.57 -0.2
122,271 - HP15_114 0.57 -0.8
122,271 - HP15_114 0.57 -0.2
122,271 - HP15_114 0.57 +0.2
122,276 - HP15_114 0.57 -0.4
122,276 - HP15_114 0.57 -1.2
122,276 - HP15_114 0.57 -0.1
122,307 - HP15_114 0.60 +0.4
122,493 + HP15_114 0.75 -0.4
122,510 - HP15_114 0.76 -0.8
122,520 - HP15_114 0.77 -0.1
122,581 + HP15_114 0.82 -0.7
122,607 - HP15_114 0.84 +0.3
122,615 + HP15_114 0.84 +0.1
122,638 + HP15_114 0.86 -0.9
122,642 - HP15_114 0.86 -0.8
122,646 - HP15_114 0.87 -0.0
122,646 - HP15_114 0.87 +0.4
122,660 + HP15_114 0.88 -0.5
122,668 - HP15_114 0.89 -0.1
122,788 + +0.2
122,788 + -0.8
122,852 + -0.8
122,860 - -1.2
122,948 - +0.2
122,956 + -0.1
122,981 - -0.9
123,067 + +0.6
123,099 + -0.1
123,171 - HP15_115 0.11 -0.0
123,171 - HP15_115 0.11 -0.2
123,195 + HP15_115 0.12 +0.0
123,195 + HP15_115 0.12 -0.5
123,253 - HP15_115 0.13 -0.7
123,327 - HP15_115 0.16 -1.2
123,349 - HP15_115 0.16 -0.1
123,362 - HP15_115 0.17 +1.4
123,388 + HP15_115 0.18 +0.8
123,504 + HP15_115 0.21 +0.6
123,504 + HP15_115 0.21 -1.2
123,563 + HP15_115 0.23 -0.1
123,566 - HP15_115 0.23 +1.8
123,571 - HP15_115 0.23 -0.2
123,577 + HP15_115 0.24 +0.8
123,606 + HP15_115 0.24 +0.1
123,967 + HP15_115 0.36 -1.0
123,998 - HP15_115 0.37 +0.2
124,003 - HP15_115 0.37 -0.8
124,012 - HP15_115 0.37 +1.8
124,083 + HP15_115 0.39 +0.6
124,083 + HP15_115 0.39 -0.1
124,173 + HP15_115 0.42 -0.4
124,210 - HP15_115 0.43 +0.0
124,295 + HP15_115 0.46 -1.0
124,295 + HP15_115 0.46 +1.1
124,295 + HP15_115 0.46 -0.7
124,314 - HP15_115 0.47 +0.3
124,330 + HP15_115 0.47 -0.4
124,338 - HP15_115 0.47 -0.1
124,355 + HP15_115 0.48 -0.4
124,358 - HP15_115 0.48 -0.5
124,363 - HP15_115 0.48 +0.5
124,455 + HP15_115 0.51 -0.5
124,487 + HP15_115 0.52 -1.3
124,488 + HP15_115 0.52 +0.8
124,495 - HP15_115 0.52 -0.5
124,495 - HP15_115 0.52 +0.2
124,495 - HP15_115 0.52 +1.4
124,559 - HP15_115 0.54 +0.2
124,611 + HP15_115 0.56 -1.3
124,628 + HP15_115 0.56 +0.3
124,647 + HP15_115 0.57 -0.7
124,678 + HP15_115 0.58 -1.4
124,723 + HP15_115 0.59 +1.1
124,723 + HP15_115 0.59 -0.7
124,723 + HP15_115 0.59 +0.2
124,723 + HP15_115 0.59 +0.2
124,723 + HP15_115 0.59 +2.1
124,731 - HP15_115 0.60 -0.1
124,731 - HP15_115 0.60 -1.0
124,731 - HP15_115 0.60 -0.2
124,731 - HP15_115 0.60 -0.3
125,017 + HP15_115 0.69 +0.3
125,022 + HP15_115 0.69 -0.8
125,027 + HP15_115 0.69 -0.6
125,156 + HP15_115 0.73 -0.2
125,160 - HP15_115 0.73 -0.7
125,164 - HP15_115 0.73 +0.0
125,193 + HP15_115 0.74 -0.6
125,208 + HP15_115 0.75 -0.3
125,224 + HP15_115 0.75 +0.2
125,292 + HP15_115 0.77 +0.5
125,293 + HP15_115 0.77 -0.7
125,301 - HP15_115 0.77 -1.2
125,368 - HP15_115 0.80 -0.3
125,390 + HP15_115 0.80 +0.4
125,390 + HP15_115 0.80 -0.4
125,391 - HP15_115 0.80 -0.8
125,398 - HP15_115 0.80 -0.9
125,426 + HP15_115 0.81 -0.6
125,510 + HP15_115 0.84 -0.8
125,651 + HP15_115 0.88 +1.8
125,715 - +0.3
125,794 + +0.1
125,794 + +0.1
125,802 - +1.6
125,825 + -1.2
125,845 - -0.5
125,906 + -1.2
125,906 + +0.8
125,921 + +0.2
125,928 - +0.8
126,067 - +0.3
126,168 + +0.2
126,212 + -0.4
126,271 + HP15_116 0.12 -0.6
126,291 - HP15_116 0.13 -0.0
126,316 + HP15_116 0.15 +0.2
126,535 + HP15_116 0.31 -0.3
126,542 + HP15_116 0.32 -1.0
126,543 - HP15_116 0.32 +0.3
126,798 + HP15_116 0.50 -0.4
126,824 + HP15_116 0.52 -0.2
126,855 + HP15_116 0.54 -0.3
126,867 + HP15_116 0.55 +0.2
126,867 + HP15_116 0.55 -0.2
126,914 + HP15_116 0.59 -0.1
126,920 + HP15_116 0.59 -0.1
126,962 + HP15_116 0.62 +0.3
126,962 + HP15_116 0.62 +1.0
126,962 + HP15_116 0.62 -0.5
126,970 - HP15_116 0.63 -0.5
126,970 - HP15_116 0.63 +0.2
126,970 - HP15_116 0.63 +1.1
126,975 + HP15_116 0.63 -0.6
126,975 + HP15_116 0.63 -0.2

Or see this region's nucleotide sequence