Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10640 and PGA1_c10650 overlap by 2 nucleotides PGA1_c10650 and PGA1_c10660 are separated by 12 nucleotides PGA1_c10660 and PGA1_c10670 are separated by 144 nucleotides
PGA1_c10640: PGA1_c10640 - hypothetical protein, at 1,101,888 to 1,103,201
_c10640
PGA1_c10650: PGA1_c10650 - putative short chain dehydrogenase, at 1,103,200 to 1,103,979
_c10650
PGA1_c10660: PGA1_c10660 - DNA alkylation repair enzyme, at 1,103,992 to 1,105,122
_c10660
PGA1_c10670: PGA1_c10670 - putative putrescine transport ATP-binding protein, at 1,105,267 to 1,106,394
_c10670
Position (kb)
1103
1104
1105
1106 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1103.087 kb on + strand at 1103.105 kb on + strand at 1103.106 kb on - strand at 1103.134 kb on + strand at 1103.134 kb on + strand at 1103.134 kb on + strand at 1103.144 kb on + strand at 1103.251 kb on + strand at 1103.257 kb on + strand at 1103.257 kb on + strand at 1103.257 kb on + strand at 1103.265 kb on - strand at 1103.265 kb on - strand at 1103.265 kb on - strand at 1103.270 kb on - strand at 1103.283 kb on - strand, within PGA1_c10650 at 1103.326 kb on - strand, within PGA1_c10650 at 1103.329 kb on + strand, within PGA1_c10650 at 1103.414 kb on + strand, within PGA1_c10650 at 1103.415 kb on + strand, within PGA1_c10650 at 1103.484 kb on + strand, within PGA1_c10650 at 1103.490 kb on + strand, within PGA1_c10650 at 1103.564 kb on - strand, within PGA1_c10650 at 1103.571 kb on - strand, within PGA1_c10650 at 1103.576 kb on + strand, within PGA1_c10650 at 1103.644 kb on + strand, within PGA1_c10650 at 1103.699 kb on + strand, within PGA1_c10650 at 1103.818 kb on + strand, within PGA1_c10650 at 1103.821 kb on - strand, within PGA1_c10650 at 1103.825 kb on + strand, within PGA1_c10650 at 1103.825 kb on + strand, within PGA1_c10650 at 1103.862 kb on + strand, within PGA1_c10650 at 1103.909 kb on - strand at 1103.932 kb on + strand at 1103.940 kb on - strand at 1104.198 kb on - strand, within PGA1_c10660 at 1104.198 kb on - strand, within PGA1_c10660 at 1104.198 kb on - strand, within PGA1_c10660 at 1104.423 kb on - strand, within PGA1_c10660 at 1104.428 kb on + strand, within PGA1_c10660 at 1104.530 kb on + strand, within PGA1_c10660 at 1104.543 kb on - strand, within PGA1_c10660 at 1104.569 kb on - strand, within PGA1_c10660 at 1104.569 kb on - strand, within PGA1_c10660 at 1104.569 kb on - strand, within PGA1_c10660 at 1104.571 kb on + strand, within PGA1_c10660 at 1104.617 kb on - strand, within PGA1_c10660 at 1104.640 kb on - strand, within PGA1_c10660 at 1104.713 kb on + strand, within PGA1_c10660 at 1104.713 kb on + strand, within PGA1_c10660 at 1104.713 kb on + strand, within PGA1_c10660 at 1104.721 kb on - strand, within PGA1_c10660 at 1104.969 kb on - strand, within PGA1_c10660 at 1104.969 kb on - strand, within PGA1_c10660 at 1104.969 kb on - strand, within PGA1_c10660 at 1105.010 kb on - strand at 1105.030 kb on - strand at 1105.049 kb on + strand at 1105.133 kb on + strand at 1105.152 kb on + strand at 1105.217 kb on + strand at 1105.250 kb on - strand at 1105.259 kb on - strand at 1105.288 kb on - strand at 1105.293 kb on - strand at 1105.462 kb on - strand, within PGA1_c10670 at 1105.597 kb on + strand, within PGA1_c10670 at 1105.691 kb on - strand, within PGA1_c10670 at 1105.750 kb on + strand, within PGA1_c10670 at 1105.898 kb on - strand, within PGA1_c10670 at 1105.903 kb on - strand, within PGA1_c10670 at 1105.917 kb on + strand, within PGA1_c10670 at 1105.917 kb on + strand, within PGA1_c10670 at 1105.960 kb on + strand, within PGA1_c10670
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 1,103,087 + -0.0 1,103,105 + -0.1 1,103,106 - -0.7 1,103,134 + +1.7 1,103,134 + +0.4 1,103,134 + -1.4 1,103,144 + -0.6 1,103,251 + -0.8 1,103,257 + +0.0 1,103,257 + -0.4 1,103,257 + -1.0 1,103,265 - +1.1 1,103,265 - -2.3 1,103,265 - +0.9 1,103,270 - +0.8 1,103,283 - PGA1_c10650 0.11 -2.7 1,103,326 - PGA1_c10650 0.16 -0.5 1,103,329 + PGA1_c10650 0.17 -0.1 1,103,414 + PGA1_c10650 0.27 +1.5 1,103,415 + PGA1_c10650 0.28 -1.3 1,103,484 + PGA1_c10650 0.36 +0.6 1,103,490 + PGA1_c10650 0.37 +0.2 1,103,564 - PGA1_c10650 0.47 -0.6 1,103,571 - PGA1_c10650 0.48 +0.1 1,103,576 + PGA1_c10650 0.48 +0.7 1,103,644 + PGA1_c10650 0.57 +2.1 1,103,699 + PGA1_c10650 0.64 -0.1 1,103,818 + PGA1_c10650 0.79 -1.0 1,103,821 - PGA1_c10650 0.80 +1.3 1,103,825 + PGA1_c10650 0.80 -0.2 1,103,825 + PGA1_c10650 0.80 -0.6 1,103,862 + PGA1_c10650 0.85 +0.5 1,103,909 - +0.5 1,103,932 + +1.0 1,103,940 - -0.9 1,104,198 - PGA1_c10660 0.18 -1.1 1,104,198 - PGA1_c10660 0.18 +1.1 1,104,198 - PGA1_c10660 0.18 -0.6 1,104,423 - PGA1_c10660 0.38 +0.4 1,104,428 + PGA1_c10660 0.39 -0.9 1,104,530 + PGA1_c10660 0.48 +0.1 1,104,543 - PGA1_c10660 0.49 +0.7 1,104,569 - PGA1_c10660 0.51 +0.0 1,104,569 - PGA1_c10660 0.51 -0.4 1,104,569 - PGA1_c10660 0.51 +0.6 1,104,571 + PGA1_c10660 0.51 -0.4 1,104,617 - PGA1_c10660 0.55 +0.0 1,104,640 - PGA1_c10660 0.57 -2.1 1,104,713 + PGA1_c10660 0.64 -0.4 1,104,713 + PGA1_c10660 0.64 -0.1 1,104,713 + PGA1_c10660 0.64 -0.1 1,104,721 - PGA1_c10660 0.64 -0.7 1,104,969 - PGA1_c10660 0.86 -0.5 1,104,969 - PGA1_c10660 0.86 -0.8 1,104,969 - PGA1_c10660 0.86 -1.0 1,105,010 - -1.7 1,105,030 - -0.5 1,105,049 + +0.4 1,105,133 + -0.1 1,105,152 + +0.6 1,105,217 + +0.6 1,105,250 - -1.1 1,105,259 - +0.6 1,105,288 - -0.1 1,105,293 - -1.7 1,105,462 - PGA1_c10670 0.17 -1.5 1,105,597 + PGA1_c10670 0.29 -0.4 1,105,691 - PGA1_c10670 0.38 -1.1 1,105,750 + PGA1_c10670 0.43 +0.2 1,105,898 - PGA1_c10670 0.56 -1.1 1,105,903 - PGA1_c10670 0.56 -1.4 1,105,917 + PGA1_c10670 0.58 -2.1 1,105,917 + PGA1_c10670 0.58 -0.1 1,105,960 + PGA1_c10670 0.61 -0.1
Or see this region's nucleotide sequence