Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06035

Experiment: 4-Methyl-2-oxopentanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06033 and H281DRAFT_06034 are separated by 136 nucleotidesH281DRAFT_06034 and H281DRAFT_06035 are separated by 79 nucleotidesH281DRAFT_06035 and H281DRAFT_06036 are separated by 300 nucleotides H281DRAFT_06033: H281DRAFT_06033 - deoxyribodipyrimidine photo-lyase type I, at 37,475 to 38,974 _06033 H281DRAFT_06034: H281DRAFT_06034 - Protein of unknown function (DUF3563), at 39,111 to 39,317 _06034 H281DRAFT_06035: H281DRAFT_06035 - esterase, PHB depolymerase family, at 39,397 to 40,587 _06035 H281DRAFT_06036: H281DRAFT_06036 - Membrane-associated phospholipid phosphatase, at 40,888 to 41,622 _06036 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1at 38.448 kb on - strand, within H281DRAFT_06033at 38.448 kb on - strand, within H281DRAFT_06033at 38.576 kb on - strand, within H281DRAFT_06033at 38.576 kb on - strand, within H281DRAFT_06033at 38.808 kb on - strand, within H281DRAFT_06033at 38.885 kb on + strandat 38.886 kb on - strandat 39.022 kb on + strandat 39.023 kb on - strandat 39.064 kb on - strandat 39.101 kb on - strandat 39.113 kb on - strandat 39.187 kb on + strand, within H281DRAFT_06034at 39.188 kb on - strand, within H281DRAFT_06034at 39.283 kb on + strand, within H281DRAFT_06034at 39.283 kb on + strand, within H281DRAFT_06034at 39.283 kb on + strand, within H281DRAFT_06034at 39.283 kb on + strand, within H281DRAFT_06034at 39.284 kb on - strand, within H281DRAFT_06034at 39.284 kb on - strand, within H281DRAFT_06034at 39.284 kb on - strand, within H281DRAFT_06034at 39.284 kb on - strand, within H281DRAFT_06034at 39.342 kb on + strandat 39.357 kb on - strandat 39.983 kb on + strand, within H281DRAFT_06035at 39.984 kb on - strand, within H281DRAFT_06035at 39.984 kb on - strand, within H281DRAFT_06035at 39.984 kb on - strand, within H281DRAFT_06035at 40.177 kb on - strand, within H281DRAFT_06035at 40.265 kb on + strand, within H281DRAFT_06035at 40.265 kb on + strand, within H281DRAFT_06035at 40.740 kb on + strandat 40.768 kb on + strandat 40.825 kb on + strandat 40.826 kb on - strandat 40.826 kb on - strandat 40.826 kb on - strandat 40.827 kb on + strandat 40.827 kb on + strandat 40.827 kb on + strandat 40.827 kb on + strandat 40.828 kb on - strandat 40.828 kb on - strandat 40.830 kb on + strandat 40.830 kb on + strandat 40.830 kb on + strandat 40.883 kb on + strandat 40.883 kb on + strandat 40.883 kb on + strandat 40.883 kb on + strandat 40.884 kb on - strandat 40.884 kb on - strandat 40.884 kb on - strandat 40.884 kb on - strandat 40.884 kb on - strandat 40.948 kb on + strandat 40.949 kb on - strandat 41.027 kb on - strand, within H281DRAFT_06036at 41.120 kb on + strand, within H281DRAFT_06036at 41.183 kb on - strand, within H281DRAFT_06036

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
remove
38,448 - H281DRAFT_06033 0.65 +0.5
38,448 - H281DRAFT_06033 0.65 +0.4
38,576 - H281DRAFT_06033 0.73 -0.4
38,576 - H281DRAFT_06033 0.73 -0.0
38,808 - H281DRAFT_06033 0.89 -0.8
38,885 + +0.2
38,886 - +0.3
39,022 + +0.4
39,023 - -0.2
39,064 - +1.2
39,101 - -0.1
39,113 - +0.4
39,187 + H281DRAFT_06034 0.37 -0.1
39,188 - H281DRAFT_06034 0.37 +0.4
39,283 + H281DRAFT_06034 0.83 -0.1
39,283 + H281DRAFT_06034 0.83 -0.1
39,283 + H281DRAFT_06034 0.83 -0.2
39,283 + H281DRAFT_06034 0.83 +0.5
39,284 - H281DRAFT_06034 0.84 +0.2
39,284 - H281DRAFT_06034 0.84 +0.3
39,284 - H281DRAFT_06034 0.84 -0.7
39,284 - H281DRAFT_06034 0.84 +0.2
39,342 + -0.3
39,357 - +0.2
39,983 + H281DRAFT_06035 0.49 +1.0
39,984 - H281DRAFT_06035 0.49 +0.3
39,984 - H281DRAFT_06035 0.49 +0.3
39,984 - H281DRAFT_06035 0.49 +0.3
40,177 - H281DRAFT_06035 0.65 -0.6
40,265 + H281DRAFT_06035 0.73 +0.8
40,265 + H281DRAFT_06035 0.73 +0.8
40,740 + -0.0
40,768 + +0.3
40,825 + -0.1
40,826 - +0.2
40,826 - +0.8
40,826 - -0.2
40,827 + +0.3
40,827 + +1.3
40,827 + +0.3
40,827 + +0.4
40,828 - +0.1
40,828 - +0.1
40,830 + -0.6
40,830 + -0.2
40,830 + +0.2
40,883 + +0.2
40,883 + -0.0
40,883 + -0.4
40,883 + -0.2
40,884 - +0.1
40,884 - +1.5
40,884 - -0.2
40,884 - +0.5
40,884 - +0.2
40,948 + +0.8
40,949 - +1.2
41,027 - H281DRAFT_06036 0.19 -0.3
41,120 + H281DRAFT_06036 0.32 -0.3
41,183 - H281DRAFT_06036 0.40 +0.1

Or see this region's nucleotide sequence