Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05830

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05829 and H281DRAFT_05830 are separated by 798 nucleotidesH281DRAFT_05830 and H281DRAFT_05831 are separated by 238 nucleotides H281DRAFT_05829: H281DRAFT_05829 - hypothetical protein (DUF2242), at 105,853 to 106,545 _05829 H281DRAFT_05830: H281DRAFT_05830 - hypothetical protein, at 107,344 to 107,595 _05830 H281DRAFT_05831: H281DRAFT_05831 - transcriptional regulator, IclR family, at 107,834 to 108,586 _05831 Position (kb) 107 108Strain fitness (log2 ratio) -2 -1 0 1at 106.369 kb on + strand, within H281DRAFT_05829at 106.369 kb on + strand, within H281DRAFT_05829at 106.370 kb on - strand, within H281DRAFT_05829at 106.536 kb on - strandat 106.536 kb on - strandat 106.536 kb on - strandat 106.536 kb on - strandat 106.538 kb on + strandat 106.539 kb on - strandat 106.539 kb on - strandat 106.539 kb on - strandat 106.637 kb on - strandat 106.637 kb on - strandat 106.637 kb on - strandat 106.637 kb on - strandat 106.640 kb on + strandat 106.640 kb on + strandat 106.640 kb on + strandat 106.647 kb on + strandat 106.647 kb on + strandat 106.649 kb on + strandat 106.649 kb on + strandat 106.649 kb on + strandat 106.649 kb on + strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.660 kb on + strandat 106.663 kb on + strandat 106.663 kb on + strandat 106.664 kb on - strandat 106.668 kb on - strandat 106.677 kb on + strandat 106.713 kb on - strandat 106.713 kb on - strandat 106.722 kb on + strandat 106.722 kb on + strandat 106.722 kb on + strandat 106.737 kb on - strandat 106.813 kb on - strandat 106.852 kb on + strandat 106.852 kb on + strandat 106.853 kb on - strandat 106.857 kb on + strandat 106.878 kb on - strandat 106.878 kb on - strandat 106.881 kb on + strandat 106.882 kb on - strandat 106.952 kb on - strandat 106.952 kb on - strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.034 kb on - strandat 107.034 kb on - strandat 107.034 kb on - strandat 107.037 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.073 kb on + strandat 107.074 kb on - strandat 107.074 kb on - strandat 107.079 kb on + strandat 107.079 kb on + strandat 107.080 kb on - strandat 107.080 kb on - strandat 107.540 kb on + strand, within H281DRAFT_05830at 107.540 kb on + strand, within H281DRAFT_05830at 107.573 kb on - strandat 107.606 kb on - strandat 107.969 kb on + strand, within H281DRAFT_05831at 107.969 kb on + strand, within H281DRAFT_05831at 108.059 kb on + strand, within H281DRAFT_05831at 108.170 kb on + strand, within H281DRAFT_05831at 108.170 kb on + strand, within H281DRAFT_05831at 108.171 kb on - strand, within H281DRAFT_05831at 108.171 kb on - strand, within H281DRAFT_05831at 108.312 kb on - strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.395 kb on + strand, within H281DRAFT_05831at 108.404 kb on - strand, within H281DRAFT_05831at 108.579 kb on + strandat 108.579 kb on + strandat 108.580 kb on - strandat 108.584 kb on + strandat 108.584 kb on + strandat 108.595 kb on - strandat 108.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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106,369 + H281DRAFT_05829 0.74 +0.5
106,369 + H281DRAFT_05829 0.74 -1.2
106,370 - H281DRAFT_05829 0.75 -1.4
106,536 - +0.5
106,536 - +0.4
106,536 - -0.3
106,536 - -0.2
106,538 + -0.3
106,539 - +0.3
106,539 - +0.2
106,539 - -0.4
106,637 - +0.7
106,637 - +0.2
106,637 - -0.4
106,637 - +0.6
106,640 + +0.1
106,640 + -0.2
106,640 + +0.7
106,647 + +0.6
106,647 + +0.9
106,649 + +0.1
106,649 + +0.1
106,649 + -1.3
106,649 + +0.9
106,650 - -1.4
106,650 - +0.1
106,650 - +0.1
106,650 - +0.0
106,650 - +0.4
106,653 + +0.3
106,653 + -0.4
106,653 + -0.5
106,653 + +0.6
106,653 + -0.1
106,653 + +0.4
106,653 + -0.1
106,653 + -0.1
106,654 - -0.1
106,654 - +0.0
106,654 - +0.2
106,654 - -0.2
106,654 - -0.7
106,654 - +0.6
106,654 - +0.2
106,654 - +0.2
106,654 - +0.5
106,654 - +0.3
106,654 - +0.2
106,654 - +0.2
106,654 - -0.5
106,654 - +0.3
106,654 - +1.0
106,657 + +0.4
106,657 + +0.8
106,657 + -1.0
106,657 + -1.7
106,657 + -0.1
106,657 + -1.1
106,657 + -0.2
106,657 + -0.3
106,657 + +0.1
106,657 + +0.2
106,657 + +0.6
106,658 - -0.6
106,658 - +0.0
106,658 - +0.1
106,658 - +1.0
106,658 - +0.4
106,658 - -0.2
106,660 + +0.6
106,663 + -0.1
106,663 + +0.2
106,664 - +0.1
106,668 - +0.3
106,677 + -0.4
106,713 - -0.4
106,713 - -0.9
106,722 + +0.0
106,722 + +0.1
106,722 + +0.3
106,737 - +0.3
106,813 - +0.1
106,852 + -0.5
106,852 + +0.4
106,853 - +0.3
106,857 + +0.0
106,878 - +0.2
106,878 - +1.4
106,881 + +1.5
106,882 - -0.5
106,952 - -0.5
106,952 - +0.6
107,033 + +0.2
107,033 + -0.5
107,033 + +0.2
107,033 + -0.3
107,034 - -0.0
107,034 - +0.7
107,034 - +0.1
107,037 + -0.1
107,054 + +0.9
107,054 + -0.3
107,054 + +0.7
107,054 + -0.5
107,054 + -0.2
107,054 + +0.2
107,073 + +0.1
107,074 - -0.1
107,074 - -0.2
107,079 + +0.9
107,079 + -0.2
107,080 - +0.2
107,080 - -0.4
107,540 + H281DRAFT_05830 0.78 +0.9
107,540 + H281DRAFT_05830 0.78 +0.3
107,573 - +0.5
107,606 - +0.4
107,969 + H281DRAFT_05831 0.18 -0.1
107,969 + H281DRAFT_05831 0.18 -0.3
108,059 + H281DRAFT_05831 0.30 +0.1
108,170 + H281DRAFT_05831 0.45 +1.0
108,170 + H281DRAFT_05831 0.45 -0.1
108,171 - H281DRAFT_05831 0.45 +0.4
108,171 - H281DRAFT_05831 0.45 +0.2
108,312 - H281DRAFT_05831 0.63 -0.6
108,341 + H281DRAFT_05831 0.67 -0.7
108,341 + H281DRAFT_05831 0.67 +0.6
108,341 + H281DRAFT_05831 0.67 +0.2
108,341 + H281DRAFT_05831 0.67 +0.2
108,341 + H281DRAFT_05831 0.67 -0.3
108,342 - H281DRAFT_05831 0.67 -0.0
108,342 - H281DRAFT_05831 0.67 +0.3
108,342 - H281DRAFT_05831 0.67 -0.5
108,342 - H281DRAFT_05831 0.67 +0.2
108,395 + H281DRAFT_05831 0.75 +0.5
108,404 - H281DRAFT_05831 0.76 -0.2
108,579 + -0.3
108,579 + -2.0
108,580 - +0.3
108,584 + +0.3
108,584 + -1.8
108,595 - -0.1
108,595 - +0.4

Or see this region's nucleotide sequence