Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05397 and H281DRAFT_05398 are separated by 436 nucleotides H281DRAFT_05398 and H281DRAFT_05399 are separated by 330 nucleotides H281DRAFT_05399 and H281DRAFT_05400 are separated by 1 nucleotides
H281DRAFT_05397: H281DRAFT_05397 - Pimeloyl-ACP methyl ester carboxylesterase, at 159,878 to 160,705
_05397
H281DRAFT_05398: H281DRAFT_05398 - hypothetical protein, at 161,142 to 161,540
_05398
H281DRAFT_05399: H281DRAFT_05399 - isoquinoline 1-oxidoreductase, alpha subunit, at 161,871 to 162,326
_05399
H281DRAFT_05400: H281DRAFT_05400 - isoquinoline 1-oxidoreductase, beta subunit, at 162,328 to 164,577
_05400
Position (kb) 161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 160.174 kb on - strand, within H281DRAFT_05397 at 160.224 kb on + strand, within H281DRAFT_05397 at 160.225 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.591 kb on - strand, within H281DRAFT_05397 at 160.614 kb on - strand, within H281DRAFT_05397 at 160.614 kb on - strand, within H281DRAFT_05397 at 160.676 kb on - strand at 160.676 kb on - strand at 160.677 kb on + strand at 160.678 kb on - strand at 160.783 kb on + strand at 160.784 kb on - strand at 161.053 kb on + strand at 161.053 kb on + strand at 161.073 kb on + strand at 161.073 kb on + strand at 161.073 kb on + strand at 161.135 kb on - strand at 161.135 kb on - strand at 161.143 kb on + strand at 161.227 kb on + strand, within H281DRAFT_05398 at 161.478 kb on - strand, within H281DRAFT_05398 at 161.654 kb on + strand at 161.654 kb on + strand at 161.655 kb on - strand at 161.885 kb on + strand at 161.904 kb on - strand at 162.046 kb on + strand at 162.279 kb on + strand, within H281DRAFT_05399 at 162.280 kb on - strand, within H281DRAFT_05399 at 162.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 160,174 - H281DRAFT_05397 0.36 -1.1 160,224 + H281DRAFT_05397 0.42 -0.0 160,225 - H281DRAFT_05397 0.42 +0.5 160,591 - H281DRAFT_05397 0.86 -0.8 160,591 - H281DRAFT_05397 0.86 +0.2 160,591 - H281DRAFT_05397 0.86 -0.2 160,591 - H281DRAFT_05397 0.86 +0.1 160,614 - H281DRAFT_05397 0.89 +0.4 160,614 - H281DRAFT_05397 0.89 +0.5 160,676 - +0.3 160,676 - -0.1 160,677 + +0.4 160,678 - +0.0 160,783 + +0.6 160,784 - -0.2 161,053 + +0.4 161,053 + +0.0 161,073 + +0.4 161,073 + +1.0 161,073 + -0.2 161,135 - +0.7 161,135 - -2.5 161,143 + +1.1 161,227 + H281DRAFT_05398 0.21 +0.7 161,478 - H281DRAFT_05398 0.84 +0.2 161,654 + +0.6 161,654 + +0.7 161,655 - +0.4 161,885 + +0.2 161,904 - +0.0 162,046 + -1.0 162,279 + H281DRAFT_05399 0.89 -0.1 162,280 - H281DRAFT_05399 0.90 +0.3 162,280 - -0.9
Or see this region's nucleotide sequence