Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05318

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05317 and H281DRAFT_05318 are separated by 163 nucleotidesH281DRAFT_05318 and H281DRAFT_05319 are separated by 183 nucleotides H281DRAFT_05317: H281DRAFT_05317 - transcriptional regulator, GntR family, at 67,465 to 68,208 _05317 H281DRAFT_05318: H281DRAFT_05318 - MFS transporter, ACS family, glucarate transporter, at 68,372 to 69,721 _05318 H281DRAFT_05319: H281DRAFT_05319 - 5-dehydro-4-deoxyglucarate dehydratase, at 69,905 to 70,822 _05319 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.427 kb on + strandat 67.427 kb on + strandat 67.428 kb on - strandat 67.470 kb on + strandat 67.470 kb on + strandat 67.471 kb on - strandat 68.163 kb on + strandat 68.231 kb on + strandat 68.259 kb on - strandat 68.398 kb on + strandat 68.398 kb on + strandat 68.421 kb on + strandat 68.421 kb on + strandat 68.682 kb on + strand, within H281DRAFT_05318at 68.683 kb on - strand, within H281DRAFT_05318at 68.884 kb on - strand, within H281DRAFT_05318at 68.911 kb on - strand, within H281DRAFT_05318at 68.931 kb on + strand, within H281DRAFT_05318at 69.028 kb on + strand, within H281DRAFT_05318at 69.029 kb on - strand, within H281DRAFT_05318at 69.066 kb on + strand, within H281DRAFT_05318at 69.066 kb on + strand, within H281DRAFT_05318at 69.067 kb on - strand, within H281DRAFT_05318at 69.143 kb on + strand, within H281DRAFT_05318at 69.169 kb on - strand, within H281DRAFT_05318at 69.221 kb on + strand, within H281DRAFT_05318at 69.221 kb on + strand, within H281DRAFT_05318at 69.237 kb on + strand, within H281DRAFT_05318at 69.517 kb on - strand, within H281DRAFT_05318at 69.517 kb on - strand, within H281DRAFT_05318at 69.543 kb on + strand, within H281DRAFT_05318at 69.544 kb on - strand, within H281DRAFT_05318at 69.544 kb on - strand, within H281DRAFT_05318at 69.622 kb on - strandat 69.638 kb on + strandat 69.639 kb on - strandat 69.646 kb on + strandat 69.647 kb on - strandat 69.733 kb on + strandat 69.733 kb on + strandat 69.734 kb on - strandat 69.740 kb on + strandat 69.740 kb on + strandat 69.741 kb on - strandat 69.741 kb on - strandat 69.741 kb on - strandat 70.173 kb on - strand, within H281DRAFT_05319at 70.209 kb on + strand, within H281DRAFT_05319at 70.210 kb on - strand, within H281DRAFT_05319at 70.395 kb on + strand, within H281DRAFT_05319at 70.395 kb on + strand, within H281DRAFT_05319at 70.396 kb on - strand, within H281DRAFT_05319at 70.479 kb on + strand, within H281DRAFT_05319at 70.479 kb on + strand, within H281DRAFT_05319at 70.480 kb on - strand, within H281DRAFT_05319at 70.639 kb on + strand, within H281DRAFT_05319at 70.640 kb on - strand, within H281DRAFT_05319

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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67,427 + +0.3
67,427 + -0.7
67,428 - +0.7
67,470 + -0.4
67,470 + +0.5
67,471 - +0.3
68,163 + -0.4
68,231 + -2.0
68,259 - -0.3
68,398 + -0.8
68,398 + +1.2
68,421 + +0.4
68,421 + -0.7
68,682 + H281DRAFT_05318 0.23 +0.2
68,683 - H281DRAFT_05318 0.23 -0.4
68,884 - H281DRAFT_05318 0.38 +0.4
68,911 - H281DRAFT_05318 0.40 +0.1
68,931 + H281DRAFT_05318 0.41 -0.6
69,028 + H281DRAFT_05318 0.49 -0.1
69,029 - H281DRAFT_05318 0.49 -0.4
69,066 + H281DRAFT_05318 0.51 -0.1
69,066 + H281DRAFT_05318 0.51 -0.6
69,067 - H281DRAFT_05318 0.51 +0.6
69,143 + H281DRAFT_05318 0.57 +0.4
69,169 - H281DRAFT_05318 0.59 +0.1
69,221 + H281DRAFT_05318 0.63 +0.5
69,221 + H281DRAFT_05318 0.63 -0.2
69,237 + H281DRAFT_05318 0.64 +0.6
69,517 - H281DRAFT_05318 0.85 -0.2
69,517 - H281DRAFT_05318 0.85 -0.7
69,543 + H281DRAFT_05318 0.87 -0.3
69,544 - H281DRAFT_05318 0.87 +0.7
69,544 - H281DRAFT_05318 0.87 -0.4
69,622 - -0.2
69,638 + +0.4
69,639 - +0.2
69,646 + -0.5
69,647 - -0.0
69,733 + -0.5
69,733 + -0.2
69,734 - +0.6
69,740 + -0.0
69,740 + +0.6
69,741 - +0.0
69,741 - +0.3
69,741 - -0.3
70,173 - H281DRAFT_05319 0.29 -0.3
70,209 + H281DRAFT_05319 0.33 -0.5
70,210 - H281DRAFT_05319 0.33 -0.1
70,395 + H281DRAFT_05319 0.53 -0.7
70,395 + H281DRAFT_05319 0.53 -0.2
70,396 - H281DRAFT_05319 0.53 -0.4
70,479 + H281DRAFT_05319 0.63 -0.5
70,479 + H281DRAFT_05319 0.63 +0.5
70,480 - H281DRAFT_05319 0.63 +0.6
70,639 + H281DRAFT_05319 0.80 -0.9
70,640 - H281DRAFT_05319 0.80 -0.2

Or see this region's nucleotide sequence