Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04898 and H281DRAFT_04899 overlap by 8 nucleotides H281DRAFT_04899 and H281DRAFT_04900 overlap by 4 nucleotides
H281DRAFT_04898: H281DRAFT_04898 - Predicted Zn-dependent protease or its inactivated homolog, at 49,160 to 50,596
_04898
H281DRAFT_04899: H281DRAFT_04899 - microcin C transport system ATP-binding protein, at 50,589 to 52,247
_04899
H281DRAFT_04900: H281DRAFT_04900 - microcin C transport system permease protein, at 52,244 to 53,359
_04900
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -1
0
1 at 50.020 kb on - strand, within H281DRAFT_04898 at 50.131 kb on + strand, within H281DRAFT_04898 at 50.132 kb on - strand, within H281DRAFT_04898 at 50.133 kb on + strand, within H281DRAFT_04898 at 50.134 kb on - strand, within H281DRAFT_04898 at 50.134 kb on - strand, within H281DRAFT_04898 at 50.558 kb on - strand at 50.666 kb on + strand at 50.667 kb on - strand at 50.669 kb on - strand at 50.703 kb on - strand at 50.799 kb on + strand, within H281DRAFT_04899 at 50.800 kb on - strand, within H281DRAFT_04899 at 50.800 kb on - strand at 50.818 kb on - strand, within H281DRAFT_04899 at 52.406 kb on + strand, within H281DRAFT_04900 at 52.594 kb on - strand, within H281DRAFT_04900 at 52.802 kb on + strand, within H281DRAFT_04900 at 52.911 kb on + strand, within H281DRAFT_04900 at 53.053 kb on - strand, within H281DRAFT_04900 at 53.065 kb on - strand, within H281DRAFT_04900 at 53.118 kb on - strand, within H281DRAFT_04900 at 53.134 kb on - strand, within H281DRAFT_04900
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 50,020 - H281DRAFT_04898 0.60 +0.1 50,131 + H281DRAFT_04898 0.68 +0.2 50,132 - H281DRAFT_04898 0.68 -0.4 50,133 + H281DRAFT_04898 0.68 -0.7 50,134 - H281DRAFT_04898 0.68 -0.0 50,134 - H281DRAFT_04898 0.68 +0.0 50,558 - +0.4 50,666 + +0.2 50,667 - +0.2 50,669 - +0.6 50,703 - -0.6 50,799 + H281DRAFT_04899 0.13 -0.0 50,800 - H281DRAFT_04899 0.13 +0.4 50,800 - -1.4 50,818 - H281DRAFT_04899 0.14 +0.9 52,406 + H281DRAFT_04900 0.15 -0.2 52,594 - H281DRAFT_04900 0.31 +0.3 52,802 + H281DRAFT_04900 0.50 -0.0 52,911 + H281DRAFT_04900 0.60 +0.5 53,053 - H281DRAFT_04900 0.72 -0.6 53,065 - H281DRAFT_04900 0.74 +0.7 53,118 - H281DRAFT_04900 0.78 -0.1 53,134 - H281DRAFT_04900 0.80 -0.2
Or see this region's nucleotide sequence