Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04168 and H281DRAFT_04169 are separated by 162 nucleotides H281DRAFT_04169 and H281DRAFT_04170 are separated by 1 nucleotides
H281DRAFT_04168: H281DRAFT_04168 - nucleobase:cation symporter-2, NCS2 family, at 281,350 to 282,759
_04168
H281DRAFT_04169: H281DRAFT_04169 - outer membrane protein, multidrug efflux system, at 282,922 to 284,451
_04169
H281DRAFT_04170: H281DRAFT_04170 - multidrug efflux pump, at 284,453 to 287,674
_04170
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -1
0
1
2 at 282.109 kb on - strand, within H281DRAFT_04168 at 282.109 kb on - strand, within H281DRAFT_04168 at 282.250 kb on - strand, within H281DRAFT_04168 at 282.585 kb on + strand, within H281DRAFT_04168 at 282.585 kb on + strand, within H281DRAFT_04168 at 282.585 kb on + strand, within H281DRAFT_04168 at 282.586 kb on - strand, within H281DRAFT_04168 at 282.801 kb on + strand at 282.852 kb on - strand at 282.917 kb on - strand at 283.043 kb on + strand at 283.083 kb on + strand, within H281DRAFT_04169 at 283.083 kb on + strand, within H281DRAFT_04169 at 283.106 kb on + strand, within H281DRAFT_04169 at 283.107 kb on - strand, within H281DRAFT_04169 at 283.159 kb on - strand, within H281DRAFT_04169 at 283.235 kb on + strand, within H281DRAFT_04169 at 283.264 kb on + strand, within H281DRAFT_04169 at 283.264 kb on + strand, within H281DRAFT_04169 at 283.298 kb on + strand, within H281DRAFT_04169 at 283.326 kb on + strand, within H281DRAFT_04169 at 283.833 kb on + strand, within H281DRAFT_04169 at 283.834 kb on - strand, within H281DRAFT_04169 at 283.834 kb on - strand, within H281DRAFT_04169 at 284.028 kb on - strand, within H281DRAFT_04169 at 284.538 kb on + strand at 284.538 kb on + strand at 284.539 kb on - strand at 284.539 kb on - strand at 284.539 kb on - strand at 284.647 kb on + strand at 285.246 kb on + strand, within H281DRAFT_04170 at 285.246 kb on + strand, within H281DRAFT_04170 at 285.247 kb on - strand, within H281DRAFT_04170 at 285.363 kb on + strand, within H281DRAFT_04170 at 285.377 kb on - strand, within H281DRAFT_04170
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 282,109 - H281DRAFT_04168 0.54 +0.4 282,109 - H281DRAFT_04168 0.54 -0.1 282,250 - H281DRAFT_04168 0.64 +0.2 282,585 + H281DRAFT_04168 0.88 +0.5 282,585 + H281DRAFT_04168 0.88 +0.2 282,585 + H281DRAFT_04168 0.88 -0.7 282,586 - H281DRAFT_04168 0.88 +0.5 282,801 + -0.5 282,852 - +0.9 282,917 - +0.6 283,043 + +1.0 283,083 + H281DRAFT_04169 0.11 +2.0 283,083 + H281DRAFT_04169 0.11 +0.3 283,106 + H281DRAFT_04169 0.12 +0.1 283,107 - H281DRAFT_04169 0.12 +0.8 283,159 - H281DRAFT_04169 0.15 +0.6 283,235 + H281DRAFT_04169 0.20 +0.6 283,264 + H281DRAFT_04169 0.22 +0.4 283,264 + H281DRAFT_04169 0.22 +0.4 283,298 + H281DRAFT_04169 0.25 -0.2 283,326 + H281DRAFT_04169 0.26 +0.3 283,833 + H281DRAFT_04169 0.60 +0.5 283,834 - H281DRAFT_04169 0.60 +0.5 283,834 - H281DRAFT_04169 0.60 +0.3 284,028 - H281DRAFT_04169 0.72 +0.3 284,538 + -1.2 284,538 + +0.4 284,539 - +0.7 284,539 - -0.1 284,539 - +0.7 284,647 + +1.1 285,246 + H281DRAFT_04170 0.25 +0.2 285,246 + H281DRAFT_04170 0.25 +0.4 285,247 - H281DRAFT_04170 0.25 +1.3 285,363 + H281DRAFT_04170 0.28 +1.2 285,377 - H281DRAFT_04170 0.29 +0.4
Or see this region's nucleotide sequence