Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03385

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03384 and H281DRAFT_03385 are separated by 84 nucleotidesH281DRAFT_03385 and H281DRAFT_03386 are separated by 162 nucleotides H281DRAFT_03384: H281DRAFT_03384 - Cytochrome c, mono- and diheme variants, at 451,267 to 452,544 _03384 H281DRAFT_03385: H281DRAFT_03385 - NADPH2 dehydrogenase, at 452,629 to 453,771 _03385 H281DRAFT_03386: H281DRAFT_03386 - Predicted arabinose efflux permease, MFS family, at 453,934 to 455,148 _03386 Position (kb) 452 453 454Strain fitness (log2 ratio) -1 0 1 2at 451.671 kb on - strand, within H281DRAFT_03384at 452.610 kb on + strandat 452.790 kb on - strand, within H281DRAFT_03385at 452.911 kb on - strand, within H281DRAFT_03385at 452.966 kb on + strand, within H281DRAFT_03385at 453.113 kb on - strand, within H281DRAFT_03385at 453.740 kb on + strandat 453.776 kb on + strandat 454.100 kb on + strand, within H281DRAFT_03386at 454.100 kb on + strand, within H281DRAFT_03386at 454.101 kb on - strand, within H281DRAFT_03386at 454.467 kb on - strand, within H281DRAFT_03386at 454.535 kb on + strand, within H281DRAFT_03386at 454.718 kb on - strand, within H281DRAFT_03386

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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451,671 - H281DRAFT_03384 0.32 +0.3
452,610 + +0.0
452,790 - H281DRAFT_03385 0.14 +0.5
452,911 - H281DRAFT_03385 0.25 +0.7
452,966 + H281DRAFT_03385 0.29 +1.8
453,113 - H281DRAFT_03385 0.42 +0.1
453,740 + +1.8
453,776 + +0.3
454,100 + H281DRAFT_03386 0.14 +0.2
454,100 + H281DRAFT_03386 0.14 +0.4
454,101 - H281DRAFT_03386 0.14 -0.2
454,467 - H281DRAFT_03386 0.44 -0.2
454,535 + H281DRAFT_03386 0.49 +0.5
454,718 - H281DRAFT_03386 0.65 -1.4

Or see this region's nucleotide sequence