Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02124 and H281DRAFT_02125 are separated by 213 nucleotides H281DRAFT_02125 and H281DRAFT_02126 are separated by 67 nucleotides
H281DRAFT_02124: H281DRAFT_02124 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 255,773 to 257,041
_02124
H281DRAFT_02125: H281DRAFT_02125 - sodium/proton antiporter, CPA1 family, at 257,255 to 259,147
_02125
H281DRAFT_02126: H281DRAFT_02126 - uracil-xanthine permease, at 259,215 to 260,522
_02126
Position (kb) 257
258
259
260 Strain fitness (log2 ratio) -1
0
1 at 256.658 kb on - strand, within H281DRAFT_02124 at 256.664 kb on + strand, within H281DRAFT_02124 at 256.680 kb on + strand, within H281DRAFT_02124 at 256.681 kb on - strand, within H281DRAFT_02124 at 256.681 kb on - strand, within H281DRAFT_02124 at 256.791 kb on - strand, within H281DRAFT_02124 at 257.134 kb on + strand at 257.135 kb on - strand at 257.165 kb on + strand at 257.165 kb on + strand at 257.166 kb on - strand at 257.166 kb on - strand at 257.166 kb on - strand at 257.173 kb on + strand at 257.298 kb on + strand at 257.348 kb on - strand at 257.493 kb on + strand, within H281DRAFT_02125 at 258.188 kb on + strand, within H281DRAFT_02125 at 258.258 kb on - strand, within H281DRAFT_02125 at 258.258 kb on - strand, within H281DRAFT_02125 at 258.310 kb on + strand, within H281DRAFT_02125 at 258.311 kb on - strand, within H281DRAFT_02125 at 258.446 kb on + strand, within H281DRAFT_02125 at 258.474 kb on - strand, within H281DRAFT_02125 at 258.748 kb on - strand, within H281DRAFT_02125 at 258.837 kb on + strand, within H281DRAFT_02125 at 258.890 kb on + strand, within H281DRAFT_02125 at 258.890 kb on + strand, within H281DRAFT_02125 at 258.890 kb on + strand, within H281DRAFT_02125 at 258.927 kb on - strand, within H281DRAFT_02125 at 258.927 kb on - strand, within H281DRAFT_02125 at 259.192 kb on + strand at 259.193 kb on - strand at 259.565 kb on - strand, within H281DRAFT_02126 at 259.565 kb on - strand, within H281DRAFT_02126 at 259.565 kb on - strand, within H281DRAFT_02126 at 259.603 kb on + strand, within H281DRAFT_02126 at 259.603 kb on + strand, within H281DRAFT_02126 at 259.679 kb on + strand at 259.681 kb on + strand, within H281DRAFT_02126 at 259.714 kb on - strand, within H281DRAFT_02126 at 259.903 kb on + strand at 259.903 kb on + strand, within H281DRAFT_02126 at 259.904 kb on - strand, within H281DRAFT_02126 at 259.904 kb on - strand, within H281DRAFT_02126 at 260.043 kb on - strand, within H281DRAFT_02126
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 256,658 - H281DRAFT_02124 0.70 +0.7 256,664 + H281DRAFT_02124 0.70 +0.3 256,680 + H281DRAFT_02124 0.71 +0.3 256,681 - H281DRAFT_02124 0.72 +0.4 256,681 - H281DRAFT_02124 0.72 -0.2 256,791 - H281DRAFT_02124 0.80 +0.6 257,134 + -0.1 257,135 - +0.1 257,165 + -0.5 257,165 + +0.5 257,166 - -0.4 257,166 - -0.3 257,166 - +0.2 257,173 + +0.9 257,298 + -0.9 257,348 - +0.9 257,493 + H281DRAFT_02125 0.13 -0.6 258,188 + H281DRAFT_02125 0.49 +0.1 258,258 - H281DRAFT_02125 0.53 +0.3 258,258 - H281DRAFT_02125 0.53 -0.4 258,310 + H281DRAFT_02125 0.56 +0.0 258,311 - H281DRAFT_02125 0.56 +0.3 258,446 + H281DRAFT_02125 0.63 +0.2 258,474 - H281DRAFT_02125 0.64 -0.4 258,748 - H281DRAFT_02125 0.79 +0.4 258,837 + H281DRAFT_02125 0.84 +1.3 258,890 + H281DRAFT_02125 0.86 +0.7 258,890 + H281DRAFT_02125 0.86 -1.0 258,890 + H281DRAFT_02125 0.86 -0.4 258,927 - H281DRAFT_02125 0.88 +0.5 258,927 - H281DRAFT_02125 0.88 +0.2 259,192 + +0.3 259,193 - +0.4 259,565 - H281DRAFT_02126 0.27 +0.3 259,565 - H281DRAFT_02126 0.27 -0.2 259,565 - H281DRAFT_02126 0.27 +0.6 259,603 + H281DRAFT_02126 0.30 -0.5 259,603 + H281DRAFT_02126 0.30 -0.2 259,679 + +0.4 259,681 + H281DRAFT_02126 0.36 -0.6 259,714 - H281DRAFT_02126 0.38 +0.1 259,903 + -1.1 259,903 + H281DRAFT_02126 0.53 -0.3 259,904 - H281DRAFT_02126 0.53 +1.6 259,904 - H281DRAFT_02126 0.53 -0.0 260,043 - H281DRAFT_02126 0.63 -1.1
Or see this region's nucleotide sequence