Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01635

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01633 and H281DRAFT_01634 are separated by 46 nucleotidesH281DRAFT_01634 and H281DRAFT_01635 are separated by 96 nucleotidesH281DRAFT_01635 and H281DRAFT_01636 are separated by 229 nucleotidesH281DRAFT_01636 and H281DRAFT_01637 are separated by 71 nucleotides H281DRAFT_01633: H281DRAFT_01633 - hypothetical protein, at 512,806 to 513,231 _01633 H281DRAFT_01634: H281DRAFT_01634 - acyl homoserine lactone synthase, at 513,278 to 513,871 _01634 H281DRAFT_01635: H281DRAFT_01635 - transcriptional regulator, GntR family, at 513,968 to 514,657 _01635 H281DRAFT_01636: H281DRAFT_01636 - Nucleotide-binding universal stress protein, UspA family, at 514,887 to 515,366 _01636 H281DRAFT_01637: H281DRAFT_01637 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 515,438 to 515,872 _01637 Position (kb) 513 514 515Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 513.179 kb on + strand, within H281DRAFT_01633at 513.193 kb on + strandat 513.193 kb on + strandat 513.194 kb on - strandat 513.194 kb on - strandat 513.205 kb on + strandat 513.205 kb on + strandat 513.205 kb on + strandat 513.205 kb on + strandat 513.205 kb on - strandat 513.206 kb on - strandat 513.206 kb on - strandat 513.206 kb on - strandat 513.206 kb on - strandat 513.341 kb on + strand, within H281DRAFT_01634at 513.341 kb on + strand, within H281DRAFT_01634at 513.341 kb on + strand, within H281DRAFT_01634at 513.342 kb on - strand, within H281DRAFT_01634at 513.342 kb on - strand, within H281DRAFT_01634at 513.386 kb on - strand, within H281DRAFT_01634at 513.419 kb on + strand, within H281DRAFT_01634at 513.419 kb on + strand, within H281DRAFT_01634at 513.420 kb on - strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.571 kb on + strand, within H281DRAFT_01634at 513.572 kb on - strand, within H281DRAFT_01634at 513.698 kb on + strand, within H281DRAFT_01634at 513.698 kb on + strand, within H281DRAFT_01634at 513.698 kb on + strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.756 kb on + strand, within H281DRAFT_01634at 513.756 kb on + strand, within H281DRAFT_01634at 513.757 kb on - strand, within H281DRAFT_01634at 513.757 kb on - strand, within H281DRAFT_01634at 513.869 kb on + strandat 513.870 kb on - strandat 513.870 kb on - strandat 513.870 kb on - strandat 513.870 kb on - strandat 513.873 kb on + strandat 513.873 kb on + strandat 513.874 kb on - strandat 514.148 kb on + strand, within H281DRAFT_01635at 514.581 kb on + strand, within H281DRAFT_01635at 514.581 kb on + strand, within H281DRAFT_01635at 514.582 kb on - strand, within H281DRAFT_01635at 514.582 kb on - strand, within H281DRAFT_01635at 514.617 kb on + strandat 514.618 kb on - strandat 514.684 kb on + strandat 514.685 kb on - strandat 514.890 kb on + strandat 514.995 kb on + strand, within H281DRAFT_01636at 515.060 kb on + strand, within H281DRAFT_01636at 515.060 kb on + strand, within H281DRAFT_01636at 515.061 kb on - strand, within H281DRAFT_01636at 515.391 kb on + strandat 515.392 kb on - strandat 515.402 kb on + strandat 515.402 kb on + strandat 515.403 kb on - strandat 515.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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513,179 + H281DRAFT_01633 0.88 +0.7
513,193 + +0.5
513,193 + +0.4
513,194 - +0.4
513,194 - +0.2
513,205 + +0.4
513,205 + +0.3
513,205 + +0.7
513,205 + -0.2
513,205 - -0.1
513,206 - +0.8
513,206 - -0.6
513,206 - +0.2
513,206 - +0.1
513,341 + H281DRAFT_01634 0.11 +0.0
513,341 + H281DRAFT_01634 0.11 +0.5
513,341 + H281DRAFT_01634 0.11 -0.2
513,342 - H281DRAFT_01634 0.11 +0.5
513,342 - H281DRAFT_01634 0.11 +0.3
513,386 - H281DRAFT_01634 0.18 +0.3
513,419 + H281DRAFT_01634 0.24 +0.2
513,419 + H281DRAFT_01634 0.24 +0.3
513,420 - H281DRAFT_01634 0.24 +0.4
513,440 + H281DRAFT_01634 0.27 -0.1
513,440 + H281DRAFT_01634 0.27 +0.0
513,440 + H281DRAFT_01634 0.27 -0.5
513,440 + H281DRAFT_01634 0.27 +0.7
513,440 + H281DRAFT_01634 0.27 +1.0
513,441 - H281DRAFT_01634 0.27 +0.2
513,441 - H281DRAFT_01634 0.27 -0.1
513,441 - H281DRAFT_01634 0.27 -0.4
513,441 - H281DRAFT_01634 0.27 -0.5
513,441 - H281DRAFT_01634 0.27 -0.3
513,571 + H281DRAFT_01634 0.49 +0.3
513,572 - H281DRAFT_01634 0.49 +0.5
513,698 + H281DRAFT_01634 0.71 -0.3
513,698 + H281DRAFT_01634 0.71 -0.0
513,698 + H281DRAFT_01634 0.71 +0.5
513,699 - H281DRAFT_01634 0.71 +0.6
513,699 - H281DRAFT_01634 0.71 +0.2
513,699 - H281DRAFT_01634 0.71 -0.1
513,699 - H281DRAFT_01634 0.71 +0.1
513,699 - H281DRAFT_01634 0.71 +0.1
513,699 - H281DRAFT_01634 0.71 +0.2
513,699 - H281DRAFT_01634 0.71 -0.1
513,756 + H281DRAFT_01634 0.80 -0.5
513,756 + H281DRAFT_01634 0.80 -1.6
513,757 - H281DRAFT_01634 0.81 +0.0
513,757 - H281DRAFT_01634 0.81 +0.0
513,869 + -0.5
513,870 - +0.4
513,870 - -0.0
513,870 - +0.7
513,870 - -0.2
513,873 + -0.1
513,873 + -0.1
513,874 - -0.3
514,148 + H281DRAFT_01635 0.26 -0.2
514,581 + H281DRAFT_01635 0.89 +0.3
514,581 + H281DRAFT_01635 0.89 +1.2
514,582 - H281DRAFT_01635 0.89 +0.6
514,582 - H281DRAFT_01635 0.89 +0.6
514,617 + -0.6
514,618 - -0.2
514,684 + +0.1
514,685 - +0.4
514,890 + -0.3
514,995 + H281DRAFT_01636 0.23 -0.5
515,060 + H281DRAFT_01636 0.36 -0.5
515,060 + H281DRAFT_01636 0.36 +0.1
515,061 - H281DRAFT_01636 0.36 +0.8
515,391 + -5.7
515,392 - -0.5
515,402 + +0.1
515,402 + +0.9
515,403 - +0.4
515,439 + -0.4

Or see this region's nucleotide sequence