Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08880 and PGA1_c08890 are separated by 4 nucleotides PGA1_c08890 and PGA1_c08900 are separated by 96 nucleotides
PGA1_c08880: PGA1_c08880 - capsule polysaccharide export protein KpsC, at 916,284 to 918,314
_c08880
PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455
_c08890
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
Position (kb)
918
919
920 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 917.387 kb on - strand, within PGA1_c08880 at 917.415 kb on - strand, within PGA1_c08880 at 917.475 kb on + strand, within PGA1_c08880 at 917.483 kb on - strand, within PGA1_c08880 at 917.496 kb on - strand, within PGA1_c08880 at 917.531 kb on - strand, within PGA1_c08880 at 917.563 kb on - strand, within PGA1_c08880 at 917.580 kb on + strand, within PGA1_c08880 at 917.598 kb on - strand, within PGA1_c08880 at 917.631 kb on - strand, within PGA1_c08880 at 917.692 kb on - strand, within PGA1_c08880 at 917.776 kb on - strand, within PGA1_c08880 at 917.798 kb on - strand, within PGA1_c08880 at 917.840 kb on - strand, within PGA1_c08880 at 917.882 kb on + strand, within PGA1_c08880 at 917.885 kb on - strand, within PGA1_c08880 at 917.898 kb on - strand, within PGA1_c08880 at 917.974 kb on - strand, within PGA1_c08880 at 917.981 kb on + strand, within PGA1_c08880 at 917.989 kb on - strand, within PGA1_c08880 at 918.002 kb on + strand, within PGA1_c08880 at 918.094 kb on + strand, within PGA1_c08880 at 918.099 kb on + strand, within PGA1_c08880 at 918.100 kb on - strand, within PGA1_c08880 at 918.131 kb on - strand at 918.142 kb on + strand at 918.147 kb on + strand at 918.147 kb on + strand at 918.155 kb on - strand at 918.186 kb on - strand at 918.194 kb on + strand at 918.194 kb on + strand at 918.196 kb on - strand at 918.202 kb on - strand at 918.202 kb on - strand at 918.202 kb on - strand at 918.202 kb on - strand at 918.280 kb on + strand at 918.288 kb on - strand at 918.315 kb on - strand at 918.331 kb on + strand at 918.396 kb on + strand at 918.458 kb on + strand, within PGA1_c08890 at 918.466 kb on - strand, within PGA1_c08890 at 918.502 kb on - strand, within PGA1_c08890 at 918.525 kb on - strand, within PGA1_c08890 at 918.607 kb on + strand, within PGA1_c08890 at 918.610 kb on - strand, within PGA1_c08890 at 918.699 kb on + strand, within PGA1_c08890 at 918.712 kb on + strand, within PGA1_c08890 at 918.765 kb on - strand, within PGA1_c08890 at 919.092 kb on + strand, within PGA1_c08890 at 919.095 kb on - strand, within PGA1_c08890 at 919.100 kb on - strand, within PGA1_c08890 at 919.194 kb on - strand, within PGA1_c08890 at 919.220 kb on - strand, within PGA1_c08890 at 919.343 kb on + strand at 919.348 kb on + strand at 919.351 kb on - strand at 919.380 kb on + strand at 919.433 kb on + strand at 919.447 kb on + strand at 919.493 kb on + strand at 919.500 kb on + strand at 919.505 kb on + strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.592 kb on + strand at 919.685 kb on + strand, within PGA1_c08900 at 919.703 kb on - strand, within PGA1_c08900 at 919.713 kb on - strand, within PGA1_c08900 at 919.737 kb on - strand, within PGA1_c08900 at 919.815 kb on - strand, within PGA1_c08900 at 919.950 kb on + strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 920.051 kb on + strand, within PGA1_c08900 at 920.054 kb on - strand, within PGA1_c08900 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 917,387 - PGA1_c08880 0.54 +0.2 917,415 - PGA1_c08880 0.56 -0.2 917,475 + PGA1_c08880 0.59 -0.4 917,483 - PGA1_c08880 0.59 +0.7 917,496 - PGA1_c08880 0.60 -1.0 917,531 - PGA1_c08880 0.61 -0.1 917,563 - PGA1_c08880 0.63 -0.5 917,580 + PGA1_c08880 0.64 -1.0 917,598 - PGA1_c08880 0.65 +0.6 917,631 - PGA1_c08880 0.66 -1.4 917,692 - PGA1_c08880 0.69 +0.8 917,776 - PGA1_c08880 0.73 +0.2 917,798 - PGA1_c08880 0.75 +0.0 917,840 - PGA1_c08880 0.77 -0.1 917,882 + PGA1_c08880 0.79 -0.1 917,885 - PGA1_c08880 0.79 +1.2 917,898 - PGA1_c08880 0.79 +0.0 917,974 - PGA1_c08880 0.83 -0.1 917,981 + PGA1_c08880 0.84 +0.2 917,989 - PGA1_c08880 0.84 -0.5 918,002 + PGA1_c08880 0.85 +0.5 918,094 + PGA1_c08880 0.89 -0.3 918,099 + PGA1_c08880 0.89 -0.0 918,100 - PGA1_c08880 0.89 -3.2 918,131 - -0.6 918,142 + +0.6 918,147 + -0.3 918,147 + +0.1 918,155 - -0.3 918,186 - +0.5 918,194 + -0.3 918,194 + +0.7 918,196 - +1.6 918,202 - +0.1 918,202 - +1.4 918,202 - -0.1 918,202 - +0.9 918,280 + -0.4 918,288 - +0.7 918,315 - +0.2 918,331 + +0.9 918,396 + -1.4 918,458 + PGA1_c08890 0.12 -1.1 918,466 - PGA1_c08890 0.13 -0.7 918,502 - PGA1_c08890 0.16 -2.7 918,525 - PGA1_c08890 0.18 -0.8 918,607 + PGA1_c08890 0.25 -1.7 918,610 - PGA1_c08890 0.26 +0.4 918,699 + PGA1_c08890 0.33 +1.0 918,712 + PGA1_c08890 0.35 -0.7 918,765 - PGA1_c08890 0.39 -2.0 919,092 + PGA1_c08890 0.68 -0.8 919,095 - PGA1_c08890 0.68 -1.7 919,100 - PGA1_c08890 0.69 +0.9 919,194 - PGA1_c08890 0.77 +0.0 919,220 - PGA1_c08890 0.79 -0.8 919,343 + -0.3 919,348 + -1.1 919,351 - -1.8 919,380 + +0.9 919,433 + -0.6 919,447 + -0.0 919,493 + -1.4 919,500 + -0.3 919,505 + -0.4 919,513 - +0.5 919,513 - +0.3 919,513 - -0.7 919,513 - -2.3 919,513 - -0.5 919,592 + +0.3 919,685 + PGA1_c08900 0.10 -0.5 919,703 - PGA1_c08900 0.12 +0.3 919,713 - PGA1_c08900 0.12 -1.7 919,737 - PGA1_c08900 0.14 +2.1 919,815 - PGA1_c08900 0.20 -0.6 919,950 + PGA1_c08900 0.31 -0.3 919,958 - PGA1_c08900 0.31 +2.2 919,958 - PGA1_c08900 0.31 -0.2 920,051 + PGA1_c08900 0.39 +0.7 920,054 - PGA1_c08900 0.39 +0.1 920,110 + PGA1_c08900 0.43 +0.0 920,112 - PGA1_c08900 0.43 -0.6 920,121 + PGA1_c08900 0.44 -0.7 920,129 - PGA1_c08900 0.45 -1.3 920,306 - PGA1_c08900 0.58 -1.2 920,336 - PGA1_c08900 0.61 +0.2 920,369 - PGA1_c08900 0.63 -0.4 920,374 - PGA1_c08900 0.64 -0.7 920,380 - PGA1_c08900 0.64 +0.6
Or see this region's nucleotide sequence