Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00070 and PGA1_c00080 are separated by 401 nucleotides PGA1_c00080 and PGA1_c00090 are separated by 153 nucleotides
PGA1_c00070: PGA1_c00070 - DNA gyrase subunit GyrB, at 6,165 to 8,582
_c00070
PGA1_c00080: PGA1_c00080 - hypothetical protein, at 8,984 to 9,811
_c00080
PGA1_c00090: PGA1_c00090 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 9,965 to 11,044
_c00090
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.609 kb on - strand at 8.642 kb on - strand at 8.659 kb on + strand at 8.662 kb on - strand at 8.662 kb on - strand at 8.662 kb on - strand at 8.664 kb on + strand at 8.667 kb on - strand at 8.672 kb on - strand at 8.672 kb on - strand at 8.672 kb on - strand at 8.672 kb on - strand at 8.709 kb on - strand at 8.719 kb on - strand at 8.736 kb on + strand at 8.736 kb on + strand at 8.757 kb on - strand at 8.764 kb on - strand at 8.767 kb on - strand at 8.767 kb on - strand at 8.791 kb on - strand at 8.832 kb on + strand at 8.835 kb on + strand at 8.837 kb on + strand at 8.863 kb on - strand at 8.963 kb on + strand at 8.971 kb on - strand at 9.012 kb on + strand at 9.015 kb on + strand at 9.082 kb on + strand, within PGA1_c00080 at 9.087 kb on + strand, within PGA1_c00080 at 9.095 kb on - strand, within PGA1_c00080 at 9.095 kb on - strand, within PGA1_c00080 at 9.138 kb on - strand, within PGA1_c00080 at 9.148 kb on + strand, within PGA1_c00080 at 9.163 kb on + strand, within PGA1_c00080 at 9.166 kb on - strand, within PGA1_c00080 at 9.171 kb on - strand, within PGA1_c00080 at 9.259 kb on - strand, within PGA1_c00080 at 9.292 kb on + strand, within PGA1_c00080 at 9.311 kb on + strand, within PGA1_c00080 at 9.339 kb on - strand, within PGA1_c00080 at 9.349 kb on - strand, within PGA1_c00080 at 9.354 kb on + strand, within PGA1_c00080 at 9.362 kb on - strand, within PGA1_c00080 at 9.506 kb on - strand, within PGA1_c00080 at 9.636 kb on - strand, within PGA1_c00080 at 9.651 kb on - strand, within PGA1_c00080 at 9.694 kb on - strand, within PGA1_c00080 at 9.713 kb on + strand, within PGA1_c00080 at 9.751 kb on + strand at 9.817 kb on + strand at 9.818 kb on + strand at 9.825 kb on - strand at 9.843 kb on + strand at 9.849 kb on - strand at 9.916 kb on + strand at 9.924 kb on + strand at 9.999 kb on - strand at 10.028 kb on + strand at 10.047 kb on + strand at 10.047 kb on + strand at 10.055 kb on - strand at 10.055 kb on - strand at 10.055 kb on - strand at 10.079 kb on - strand, within PGA1_c00090 at 10.114 kb on + strand, within PGA1_c00090 at 10.127 kb on - strand, within PGA1_c00090 at 10.179 kb on + strand, within PGA1_c00090 at 10.184 kb on + strand, within PGA1_c00090 at 10.187 kb on - strand, within PGA1_c00090 at 10.189 kb on + strand, within PGA1_c00090 at 10.281 kb on - strand, within PGA1_c00090 at 10.293 kb on - strand, within PGA1_c00090 at 10.293 kb on - strand, within PGA1_c00090 at 10.336 kb on - strand, within PGA1_c00090 at 10.343 kb on + strand, within PGA1_c00090 at 10.351 kb on - strand, within PGA1_c00090 at 10.351 kb on - strand, within PGA1_c00090 at 10.359 kb on - strand, within PGA1_c00090 at 10.421 kb on + strand, within PGA1_c00090 at 10.433 kb on + strand, within PGA1_c00090 at 10.434 kb on - strand, within PGA1_c00090 at 10.443 kb on + strand, within PGA1_c00090 at 10.445 kb on + strand, within PGA1_c00090 at 10.614 kb on + strand, within PGA1_c00090 at 10.622 kb on + strand, within PGA1_c00090 at 10.622 kb on - strand, within PGA1_c00090 at 10.622 kb on - strand, within PGA1_c00090 at 10.703 kb on + strand, within PGA1_c00090 at 10.703 kb on + strand, within PGA1_c00090 at 10.704 kb on + strand, within PGA1_c00090 at 10.719 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.748 kb on - strand, within PGA1_c00090 at 10.798 kb on - strand, within PGA1_c00090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 8,609 - +0.1 8,642 - -1.6 8,659 + +0.5 8,662 - -0.2 8,662 - -1.0 8,662 - +0.3 8,664 + -0.5 8,667 - +0.8 8,672 - +0.3 8,672 - -0.3 8,672 - -1.5 8,672 - +1.3 8,709 - -2.1 8,719 - +0.1 8,736 + -0.9 8,736 + +0.4 8,757 - -1.2 8,764 - +0.2 8,767 - -0.8 8,767 - +0.1 8,791 - -1.8 8,832 + -2.6 8,835 + +0.5 8,837 + +0.2 8,863 - +0.1 8,963 + -0.6 8,971 - +0.2 9,012 + +0.0 9,015 + -0.8 9,082 + PGA1_c00080 0.12 -1.6 9,087 + PGA1_c00080 0.12 +0.3 9,095 - PGA1_c00080 0.13 -0.9 9,095 - PGA1_c00080 0.13 -2.2 9,138 - PGA1_c00080 0.19 -2.1 9,148 + PGA1_c00080 0.20 -2.1 9,163 + PGA1_c00080 0.22 -0.2 9,166 - PGA1_c00080 0.22 -0.8 9,171 - PGA1_c00080 0.23 +0.4 9,259 - PGA1_c00080 0.33 +0.8 9,292 + PGA1_c00080 0.37 +0.2 9,311 + PGA1_c00080 0.39 -1.2 9,339 - PGA1_c00080 0.43 -1.6 9,349 - PGA1_c00080 0.44 +0.8 9,354 + PGA1_c00080 0.45 +0.4 9,362 - PGA1_c00080 0.46 -2.6 9,506 - PGA1_c00080 0.63 +0.1 9,636 - PGA1_c00080 0.79 -0.8 9,651 - PGA1_c00080 0.81 +0.2 9,694 - PGA1_c00080 0.86 -1.8 9,713 + PGA1_c00080 0.88 -1.9 9,751 + -0.1 9,817 + -0.2 9,818 + +0.8 9,825 - -1.2 9,843 + -0.8 9,849 - +0.8 9,916 + -0.4 9,924 + +0.4 9,999 - -0.7 10,028 + -0.8 10,047 + -0.8 10,047 + -0.2 10,055 - +1.0 10,055 - -0.2 10,055 - +0.8 10,079 - PGA1_c00090 0.11 +1.4 10,114 + PGA1_c00090 0.14 +0.6 10,127 - PGA1_c00090 0.15 -0.5 10,179 + PGA1_c00090 0.20 -0.1 10,184 + PGA1_c00090 0.20 +0.0 10,187 - PGA1_c00090 0.21 +0.6 10,189 + PGA1_c00090 0.21 +0.2 10,281 - PGA1_c00090 0.29 +0.8 10,293 - PGA1_c00090 0.30 -0.4 10,293 - PGA1_c00090 0.30 -1.5 10,336 - PGA1_c00090 0.34 -0.8 10,343 + PGA1_c00090 0.35 +0.6 10,351 - PGA1_c00090 0.36 +0.5 10,351 - PGA1_c00090 0.36 +0.4 10,359 - PGA1_c00090 0.36 +0.5 10,421 + PGA1_c00090 0.42 +2.0 10,433 + PGA1_c00090 0.43 -0.6 10,434 - PGA1_c00090 0.43 -0.4 10,443 + PGA1_c00090 0.44 -0.2 10,445 + PGA1_c00090 0.44 +0.3 10,614 + PGA1_c00090 0.60 +1.4 10,622 + PGA1_c00090 0.61 -0.6 10,622 - PGA1_c00090 0.61 +2.6 10,622 - PGA1_c00090 0.61 +0.8 10,703 + PGA1_c00090 0.68 +1.8 10,703 + PGA1_c00090 0.68 -0.1 10,704 + PGA1_c00090 0.68 -0.1 10,719 + PGA1_c00090 0.70 +0.2 10,740 + PGA1_c00090 0.72 +0.3 10,740 + PGA1_c00090 0.72 -0.6 10,740 + PGA1_c00090 0.72 +1.0 10,740 + PGA1_c00090 0.72 -0.1 10,748 - PGA1_c00090 0.72 -0.2 10,798 - PGA1_c00090 0.77 -0.2
Or see this region's nucleotide sequence