Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07030

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07020 and PGA1_c07030 are separated by 89 nucleotidesPGA1_c07030 and PGA1_c07040 are separated by 71 nucleotides PGA1_c07020: PGA1_c07020 - Poly(3-hydroxybutyrate) depolymerase, at 720,752 to 721,573 _c07020 PGA1_c07030: PGA1_c07030 - phenylalanyl-tRNA synthetase beta chain, at 721,663 to 724,059 _c07030 PGA1_c07040: PGA1_c07040 - transcriptional regulator, lysR family, at 724,131 to 725,009 _c07040 Position (kb) 721 722 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.758 kb on + strandat 720.772 kb on + strandat 720.780 kb on - strandat 720.787 kb on + strandat 720.790 kb on - strandat 720.805 kb on - strandat 720.826 kb on + strandat 720.826 kb on + strandat 720.866 kb on - strand, within PGA1_c07020at 720.879 kb on + strand, within PGA1_c07020at 720.912 kb on + strand, within PGA1_c07020at 720.912 kb on + strand, within PGA1_c07020at 720.914 kb on - strand, within PGA1_c07020at 720.914 kb on - strand, within PGA1_c07020at 720.920 kb on - strand, within PGA1_c07020at 720.988 kb on + strand, within PGA1_c07020at 721.037 kb on - strand, within PGA1_c07020at 721.079 kb on + strand, within PGA1_c07020at 721.100 kb on + strand, within PGA1_c07020at 721.100 kb on + strand, within PGA1_c07020at 721.100 kb on + strand, within PGA1_c07020at 721.100 kb on + strand, within PGA1_c07020at 721.100 kb on + strand, within PGA1_c07020at 721.143 kb on + strand, within PGA1_c07020at 721.151 kb on - strand, within PGA1_c07020at 721.211 kb on + strand, within PGA1_c07020at 721.253 kb on + strand, within PGA1_c07020at 721.369 kb on - strand, within PGA1_c07020at 721.459 kb on - strand, within PGA1_c07020at 721.459 kb on - strand, within PGA1_c07020at 721.479 kb on + strand, within PGA1_c07020at 721.499 kb on + strandat 721.574 kb on + strandat 721.591 kb on + strandat 724.087 kb on - strandat 724.160 kb on + strandat 724.160 kb on + strandat 724.160 kb on + strandat 724.168 kb on - strandat 724.168 kb on - strandat 724.168 kb on - strandat 724.168 kb on - strandat 724.235 kb on + strand, within PGA1_c07040at 724.243 kb on - strand, within PGA1_c07040at 724.243 kb on - strand, within PGA1_c07040at 724.244 kb on - strand, within PGA1_c07040at 724.246 kb on + strand, within PGA1_c07040at 724.254 kb on - strand, within PGA1_c07040at 724.277 kb on - strand, within PGA1_c07040at 724.333 kb on - strand, within PGA1_c07040at 724.383 kb on - strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.455 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.504 kb on + strand, within PGA1_c07040at 724.530 kb on + strand, within PGA1_c07040at 724.564 kb on - strand, within PGA1_c07040at 724.594 kb on + strand, within PGA1_c07040at 724.656 kb on + strand, within PGA1_c07040at 724.675 kb on + strand, within PGA1_c07040at 724.910 kb on - strand, within PGA1_c07040at 724.912 kb on + strand, within PGA1_c07040at 724.915 kb on - strand, within PGA1_c07040at 724.918 kb on + strand, within PGA1_c07040at 724.922 kb on + strandat 724.922 kb on + strandat 724.922 kb on + strandat 724.930 kb on - strandat 724.930 kb on - strandat 724.937 kb on + strandat 724.937 kb on + strandat 724.941 kb on + strandat 724.947 kb on + strandat 724.978 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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720,758 + -2.4
720,772 + +0.6
720,780 - +0.1
720,787 + +1.4
720,790 - -0.4
720,805 - +0.0
720,826 + +1.2
720,826 + +0.8
720,866 - PGA1_c07020 0.14 +0.5
720,879 + PGA1_c07020 0.15 +0.4
720,912 + PGA1_c07020 0.19 -0.5
720,912 + PGA1_c07020 0.19 +0.8
720,914 - PGA1_c07020 0.20 -0.1
720,914 - PGA1_c07020 0.20 +0.2
720,920 - PGA1_c07020 0.20 -0.9
720,988 + PGA1_c07020 0.29 +0.8
721,037 - PGA1_c07020 0.35 +0.3
721,079 + PGA1_c07020 0.40 -0.9
721,100 + PGA1_c07020 0.42 +0.5
721,100 + PGA1_c07020 0.42 +0.3
721,100 + PGA1_c07020 0.42 +1.0
721,100 + PGA1_c07020 0.42 -0.4
721,100 + PGA1_c07020 0.42 +0.6
721,143 + PGA1_c07020 0.48 +0.8
721,151 - PGA1_c07020 0.49 +2.2
721,211 + PGA1_c07020 0.56 +1.5
721,253 + PGA1_c07020 0.61 -0.6
721,369 - PGA1_c07020 0.75 +0.3
721,459 - PGA1_c07020 0.86 +0.2
721,459 - PGA1_c07020 0.86 -0.0
721,479 + PGA1_c07020 0.88 +1.0
721,499 + -0.4
721,574 + +1.0
721,591 + -1.4
724,087 - -0.2
724,160 + -0.2
724,160 + -0.4
724,160 + +0.5
724,168 - +1.2
724,168 - +0.2
724,168 - -0.1
724,168 - -0.4
724,235 + PGA1_c07040 0.12 +0.7
724,243 - PGA1_c07040 0.13 +1.1
724,243 - PGA1_c07040 0.13 +0.2
724,244 - PGA1_c07040 0.13 +0.3
724,246 + PGA1_c07040 0.13 +0.6
724,254 - PGA1_c07040 0.14 -2.8
724,277 - PGA1_c07040 0.17 -0.1
724,333 - PGA1_c07040 0.23 +0.6
724,383 - PGA1_c07040 0.29 +0.2
724,416 + PGA1_c07040 0.32 -1.8
724,416 + PGA1_c07040 0.32 +0.2
724,416 + PGA1_c07040 0.32 +1.0
724,416 + PGA1_c07040 0.32 -0.0
724,424 - PGA1_c07040 0.33 +0.9
724,424 - PGA1_c07040 0.33 +0.4
724,424 - PGA1_c07040 0.33 +1.0
724,424 - PGA1_c07040 0.33 -0.2
724,455 + PGA1_c07040 0.37 +0.8
724,494 + PGA1_c07040 0.41 +0.3
724,494 + PGA1_c07040 0.41 -0.6
724,494 + PGA1_c07040 0.41 -0.4
724,494 + PGA1_c07040 0.41 +0.7
724,504 + PGA1_c07040 0.42 -0.6
724,530 + PGA1_c07040 0.45 +0.5
724,564 - PGA1_c07040 0.49 +0.4
724,594 + PGA1_c07040 0.53 +0.1
724,656 + PGA1_c07040 0.60 -0.4
724,675 + PGA1_c07040 0.62 +1.5
724,910 - PGA1_c07040 0.89 +0.4
724,912 + PGA1_c07040 0.89 +0.6
724,915 - PGA1_c07040 0.89 +0.1
724,918 + PGA1_c07040 0.90 -0.4
724,922 + +0.2
724,922 + -0.0
724,922 + -0.5
724,930 - -0.2
724,930 - -1.4
724,937 + +1.8
724,937 + -0.4
724,941 + -0.1
724,947 + +0.8
724,978 + -0.1

Or see this region's nucleotide sequence