Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05680 and PGA1_c05690 are separated by 106 nucleotides PGA1_c05690 and PGA1_c05700 are separated by 135 nucleotides
PGA1_c05680: PGA1_c05680 - Predicted membrane protein, at 580,280 to 581,335
_c05680
PGA1_c05690: PGA1_c05690 - Truncated hemoglobins, at 581,442 to 581,852
_c05690
PGA1_c05700: PGA1_c05700 - KAP family P-loop domain., at 581,988 to 583,832
_c05700
Position (kb) 581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 580.494 kb on - strand, within PGA1_c05680 at 580.574 kb on + strand, within PGA1_c05680 at 580.800 kb on + strand, within PGA1_c05680 at 580.815 kb on + strand, within PGA1_c05680 at 580.823 kb on - strand, within PGA1_c05680 at 580.976 kb on + strand, within PGA1_c05680 at 581.053 kb on + strand, within PGA1_c05680 at 581.066 kb on - strand, within PGA1_c05680 at 581.089 kb on - strand, within PGA1_c05680 at 581.131 kb on + strand, within PGA1_c05680 at 581.149 kb on - strand, within PGA1_c05680 at 581.151 kb on + strand, within PGA1_c05680 at 581.156 kb on + strand, within PGA1_c05680 at 581.169 kb on - strand, within PGA1_c05680 at 581.189 kb on + strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.267 kb on - strand at 581.267 kb on - strand at 581.276 kb on + strand at 581.276 kb on + strand at 581.276 kb on + strand at 581.283 kb on + strand at 581.284 kb on - strand at 581.284 kb on - strand at 581.366 kb on + strand at 581.440 kb on + strand at 581.448 kb on - strand at 581.502 kb on + strand, within PGA1_c05690 at 581.502 kb on - strand, within PGA1_c05690 at 581.530 kb on + strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.641 kb on - strand, within PGA1_c05690 at 581.719 kb on + strand, within PGA1_c05690 at 581.719 kb on + strand, within PGA1_c05690 at 581.749 kb on + strand, within PGA1_c05690 at 581.749 kb on + strand, within PGA1_c05690 at 581.770 kb on - strand, within PGA1_c05690 at 581.782 kb on - strand, within PGA1_c05690 at 581.810 kb on + strand, within PGA1_c05690 at 581.818 kb on - strand at 581.823 kb on - strand at 581.823 kb on - strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.848 kb on - strand at 581.849 kb on - strand at 581.849 kb on - strand at 581.864 kb on - strand at 581.883 kb on - strand at 581.888 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.931 kb on - strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.959 kb on + strand at 581.962 kb on - strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.968 kb on + strand at 581.972 kb on + strand at 581.974 kb on - strand at 581.974 kb on - strand at 581.981 kb on - strand at 582.006 kb on - strand at 582.006 kb on - strand at 582.008 kb on + strand at 582.016 kb on - strand at 582.077 kb on + strand at 582.082 kb on + strand at 582.082 kb on + strand at 582.085 kb on - strand at 582.085 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.095 kb on + strand at 582.100 kb on - strand at 582.159 kb on + strand at 582.167 kb on - strand at 582.171 kb on - strand at 582.171 kb on - strand at 582.173 kb on + strand, within PGA1_c05700 at 582.192 kb on + strand, within PGA1_c05700 at 582.217 kb on + strand, within PGA1_c05700 at 582.247 kb on - strand, within PGA1_c05700 at 582.273 kb on + strand, within PGA1_c05700 at 582.288 kb on + strand, within PGA1_c05700 at 582.332 kb on - strand, within PGA1_c05700 at 582.332 kb on - strand, within PGA1_c05700 at 582.335 kb on + strand, within PGA1_c05700 at 582.335 kb on + strand, within PGA1_c05700 at 582.337 kb on - strand, within PGA1_c05700 at 582.338 kb on + strand, within PGA1_c05700 at 582.343 kb on - strand, within PGA1_c05700 at 582.346 kb on - strand, within PGA1_c05700 at 582.346 kb on - strand, within PGA1_c05700 at 582.357 kb on + strand, within PGA1_c05700 at 582.376 kb on - strand, within PGA1_c05700 at 582.400 kb on + strand, within PGA1_c05700 at 582.422 kb on + strand, within PGA1_c05700 at 582.435 kb on + strand, within PGA1_c05700 at 582.468 kb on - strand, within PGA1_c05700 at 582.545 kb on + strand, within PGA1_c05700 at 582.548 kb on - strand, within PGA1_c05700 at 582.548 kb on - strand, within PGA1_c05700 at 582.553 kb on - strand, within PGA1_c05700 at 582.556 kb on - strand, within PGA1_c05700 at 582.575 kb on + strand, within PGA1_c05700 at 582.580 kb on + strand, within PGA1_c05700 at 582.583 kb on - strand, within PGA1_c05700 at 582.583 kb on - strand, within PGA1_c05700 at 582.587 kb on + strand, within PGA1_c05700 at 582.588 kb on + strand, within PGA1_c05700 at 582.609 kb on + strand, within PGA1_c05700 at 582.609 kb on + strand, within PGA1_c05700 at 582.609 kb on + strand, within PGA1_c05700 at 582.609 kb on + strand, within PGA1_c05700 at 582.610 kb on - strand, within PGA1_c05700 at 582.615 kb on + strand, within PGA1_c05700 at 582.617 kb on - strand, within PGA1_c05700 at 582.617 kb on - strand, within PGA1_c05700 at 582.617 kb on - strand, within PGA1_c05700 at 582.623 kb on - strand, within PGA1_c05700 at 582.636 kb on + strand, within PGA1_c05700 at 582.636 kb on + strand, within PGA1_c05700 at 582.636 kb on + strand, within PGA1_c05700 at 582.636 kb on + strand, within PGA1_c05700 at 582.636 kb on + strand, within PGA1_c05700 at 582.667 kb on + strand, within PGA1_c05700 at 582.683 kb on + strand, within PGA1_c05700 at 582.690 kb on - strand, within PGA1_c05700 at 582.703 kb on + strand, within PGA1_c05700 at 582.710 kb on + strand, within PGA1_c05700 at 582.715 kb on - strand, within PGA1_c05700 at 582.734 kb on + strand, within PGA1_c05700 at 582.756 kb on + strand, within PGA1_c05700 at 582.756 kb on + strand, within PGA1_c05700 at 582.763 kb on + strand, within PGA1_c05700 at 582.763 kb on + strand, within PGA1_c05700 at 582.763 kb on + strand, within PGA1_c05700 at 582.763 kb on + strand, within PGA1_c05700 at 582.764 kb on - strand, within PGA1_c05700 at 582.764 kb on - strand, within PGA1_c05700 at 582.795 kb on - strand, within PGA1_c05700 at 582.800 kb on + strand, within PGA1_c05700 at 582.800 kb on + strand, within PGA1_c05700 at 582.801 kb on + strand, within PGA1_c05700 at 582.801 kb on + strand, within PGA1_c05700 at 582.806 kb on - strand, within PGA1_c05700 at 582.838 kb on + strand, within PGA1_c05700 at 582.838 kb on + strand, within PGA1_c05700 at 582.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 580,494 - PGA1_c05680 0.20 +0.4 580,574 + PGA1_c05680 0.28 +0.7 580,800 + PGA1_c05680 0.49 -0.3 580,815 + PGA1_c05680 0.51 -0.3 580,823 - PGA1_c05680 0.51 -2.1 580,976 + PGA1_c05680 0.66 -0.6 581,053 + PGA1_c05680 0.73 -1.4 581,066 - PGA1_c05680 0.74 +0.2 581,089 - PGA1_c05680 0.77 -0.4 581,131 + PGA1_c05680 0.81 +0.7 581,149 - PGA1_c05680 0.82 +1.2 581,151 + PGA1_c05680 0.82 -1.9 581,156 + PGA1_c05680 0.83 -0.2 581,169 - PGA1_c05680 0.84 -0.2 581,189 + PGA1_c05680 0.86 -1.7 581,197 - PGA1_c05680 0.87 +1.2 581,197 - PGA1_c05680 0.87 +0.1 581,197 - PGA1_c05680 0.87 +0.3 581,197 - PGA1_c05680 0.87 -1.2 581,197 - PGA1_c05680 0.87 -0.8 581,267 - -0.3 581,267 - +0.8 581,276 + -0.4 581,276 + -0.2 581,276 + -0.7 581,283 + +0.8 581,284 - -2.8 581,284 - -0.1 581,366 + -0.1 581,440 + +0.7 581,448 - -0.2 581,502 + PGA1_c05690 0.15 -1.3 581,502 - PGA1_c05690 0.15 -1.1 581,530 + PGA1_c05690 0.21 -1.2 581,538 - PGA1_c05690 0.23 -0.8 581,538 - PGA1_c05690 0.23 -0.5 581,538 - PGA1_c05690 0.23 -0.3 581,641 - PGA1_c05690 0.48 -0.3 581,719 + PGA1_c05690 0.67 -0.1 581,719 + PGA1_c05690 0.67 -2.1 581,749 + PGA1_c05690 0.75 -1.6 581,749 + PGA1_c05690 0.75 -2.9 581,770 - PGA1_c05690 0.80 -1.7 581,782 - PGA1_c05690 0.83 -0.3 581,810 + PGA1_c05690 0.90 -0.9 581,818 - -0.5 581,823 - -1.1 581,823 - -1.1 581,841 + -2.6 581,841 + -1.7 581,841 + +0.8 581,841 + -1.2 581,848 - -0.1 581,849 - +0.0 581,849 - -0.9 581,864 - -1.6 581,883 - +0.4 581,888 - -0.3 581,923 - -0.7 581,923 - -0.6 581,923 - +0.2 581,923 - -2.0 581,931 - -1.9 581,954 + +0.6 581,954 + +1.2 581,954 + +0.7 581,954 + +0.1 581,959 + +0.5 581,962 - +0.0 581,966 + -1.5 581,966 + -0.2 581,966 + +0.1 581,966 + +0.0 581,966 + -0.0 581,968 + -0.7 581,972 + +0.8 581,974 - -0.0 581,974 - +0.5 581,981 - +0.6 582,006 - +0.3 582,006 - -0.9 582,008 + +1.0 582,016 - +1.1 582,077 + -0.0 582,082 + -1.3 582,082 + +1.1 582,085 - +1.1 582,085 - -0.3 582,090 - -1.2 582,090 - +0.2 582,090 - -1.5 582,090 - +0.1 582,090 - +1.4 582,090 - -0.9 582,090 - -0.3 582,090 - -1.2 582,090 - +0.2 582,095 + +0.3 582,100 - +0.0 582,159 + -0.6 582,167 - -0.7 582,171 - +0.2 582,171 - -1.1 582,173 + PGA1_c05700 0.10 -0.5 582,192 + PGA1_c05700 0.11 +0.1 582,217 + PGA1_c05700 0.12 -2.3 582,247 - PGA1_c05700 0.14 +1.2 582,273 + PGA1_c05700 0.15 +0.7 582,288 + PGA1_c05700 0.16 +0.3 582,332 - PGA1_c05700 0.19 -0.3 582,332 - PGA1_c05700 0.19 +0.8 582,335 + PGA1_c05700 0.19 -2.1 582,335 + PGA1_c05700 0.19 +0.2 582,337 - PGA1_c05700 0.19 -0.1 582,338 + PGA1_c05700 0.19 +0.7 582,343 - PGA1_c05700 0.19 +0.4 582,346 - PGA1_c05700 0.19 -0.4 582,346 - PGA1_c05700 0.19 +0.7 582,357 + PGA1_c05700 0.20 +1.3 582,376 - PGA1_c05700 0.21 +0.6 582,400 + PGA1_c05700 0.22 -2.0 582,422 + PGA1_c05700 0.24 +0.7 582,435 + PGA1_c05700 0.24 -0.3 582,468 - PGA1_c05700 0.26 +0.2 582,545 + PGA1_c05700 0.30 +0.2 582,548 - PGA1_c05700 0.30 -1.3 582,548 - PGA1_c05700 0.30 +0.3 582,553 - PGA1_c05700 0.31 +0.5 582,556 - PGA1_c05700 0.31 +1.3 582,575 + PGA1_c05700 0.32 +0.5 582,580 + PGA1_c05700 0.32 -0.8 582,583 - PGA1_c05700 0.32 +0.3 582,583 - PGA1_c05700 0.32 -1.5 582,587 + PGA1_c05700 0.32 -0.9 582,588 + PGA1_c05700 0.33 +0.1 582,609 + PGA1_c05700 0.34 -1.5 582,609 + PGA1_c05700 0.34 +0.4 582,609 + PGA1_c05700 0.34 +0.0 582,609 + PGA1_c05700 0.34 -0.8 582,610 - PGA1_c05700 0.34 +0.2 582,615 + PGA1_c05700 0.34 +0.8 582,617 - PGA1_c05700 0.34 +0.3 582,617 - PGA1_c05700 0.34 -1.3 582,617 - PGA1_c05700 0.34 +0.9 582,623 - PGA1_c05700 0.34 -0.1 582,636 + PGA1_c05700 0.35 +0.0 582,636 + PGA1_c05700 0.35 +0.2 582,636 + PGA1_c05700 0.35 -1.7 582,636 + PGA1_c05700 0.35 -0.3 582,636 + PGA1_c05700 0.35 -0.1 582,667 + PGA1_c05700 0.37 +1.9 582,683 + PGA1_c05700 0.38 -0.1 582,690 - PGA1_c05700 0.38 +0.1 582,703 + PGA1_c05700 0.39 -0.2 582,710 + PGA1_c05700 0.39 +1.0 582,715 - PGA1_c05700 0.39 +2.7 582,734 + PGA1_c05700 0.40 +0.2 582,756 + PGA1_c05700 0.42 +0.1 582,756 + PGA1_c05700 0.42 +0.3 582,763 + PGA1_c05700 0.42 -0.7 582,763 + PGA1_c05700 0.42 +0.1 582,763 + PGA1_c05700 0.42 -0.2 582,763 + PGA1_c05700 0.42 +0.7 582,764 - PGA1_c05700 0.42 -0.5 582,764 - PGA1_c05700 0.42 -1.0 582,795 - PGA1_c05700 0.44 -0.1 582,800 + PGA1_c05700 0.44 +1.5 582,800 + PGA1_c05700 0.44 -0.2 582,801 + PGA1_c05700 0.44 +0.7 582,801 + PGA1_c05700 0.44 +0.4 582,806 - PGA1_c05700 0.44 +0.1 582,838 + PGA1_c05700 0.46 -0.3 582,838 + PGA1_c05700 0.46 +0.9 582,846 + -0.1
Or see this region's nucleotide sequence