Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05650

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05630 and PGA1_c05640 are separated by 37 nucleotidesPGA1_c05640 and PGA1_c05650 are separated by 155 nucleotidesPGA1_c05650 and PGA1_c05660 are separated by 145 nucleotides PGA1_c05630: PGA1_c05630 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 576,069 to 576,533 _c05630 PGA1_c05640: PGA1_c05640 - hypothetical protein, at 576,571 to 577,242 _c05640 PGA1_c05650: PGA1_c05650 - tRNA pseudouridine synthase A, at 577,398 to 578,171 _c05650 PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732 _c05660 Position (kb) 577 578 579Strain fitness (log2 ratio) -2 -1 0 1at 576.466 kb on + strand, within PGA1_c05630at 576.474 kb on - strand, within PGA1_c05630at 576.476 kb on + strand, within PGA1_c05630at 576.484 kb on - strand, within PGA1_c05630at 576.484 kb on - strand, within PGA1_c05630at 576.506 kb on - strandat 576.506 kb on - strandat 576.512 kb on + strandat 576.538 kb on + strandat 576.676 kb on + strand, within PGA1_c05640at 576.714 kb on + strand, within PGA1_c05640at 576.748 kb on + strand, within PGA1_c05640at 576.756 kb on - strand, within PGA1_c05640at 576.756 kb on - strand, within PGA1_c05640at 576.865 kb on + strand, within PGA1_c05640at 576.865 kb on + strand, within PGA1_c05640at 576.873 kb on - strand, within PGA1_c05640at 576.873 kb on - strand, within PGA1_c05640at 576.873 kb on - strand, within PGA1_c05640at 576.873 kb on - strand, within PGA1_c05640at 577.048 kb on - strand, within PGA1_c05640at 577.121 kb on - strand, within PGA1_c05640at 577.121 kb on - strand, within PGA1_c05640at 577.349 kb on + strandat 577.357 kb on - strandat 577.357 kb on - strandat 577.357 kb on - strandat 577.359 kb on + strandat 577.367 kb on - strandat 577.374 kb on + strandat 577.467 kb on - strandat 577.544 kb on + strand, within PGA1_c05650at 577.571 kb on - strand, within PGA1_c05650at 577.637 kb on - strand, within PGA1_c05650at 578.124 kb on + strandat 578.251 kb on + strandat 578.251 kb on + strandat 578.251 kb on + strandat 578.251 kb on + strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.291 kb on - strandat 578.344 kb on + strandat 578.352 kb on - strandat 578.354 kb on + strandat 578.354 kb on + strandat 578.354 kb on + strandat 578.354 kb on + strandat 578.430 kb on - strandat 578.430 kb on - strandat 578.430 kb on - strandat 578.456 kb on + strandat 578.456 kb on + strandat 578.489 kb on + strand, within PGA1_c05660at 578.647 kb on + strand, within PGA1_c05660at 578.667 kb on + strand, within PGA1_c05660at 578.668 kb on - strand, within PGA1_c05660at 578.782 kb on + strand, within PGA1_c05660at 578.947 kb on + strand, within PGA1_c05660at 578.952 kb on + strand, within PGA1_c05660at 578.952 kb on + strand, within PGA1_c05660at 579.010 kb on - strand, within PGA1_c05660at 579.014 kb on + strand, within PGA1_c05660at 579.159 kb on + strand, within PGA1_c05660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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576,466 + PGA1_c05630 0.85 -0.0
576,474 - PGA1_c05630 0.87 +0.8
576,476 + PGA1_c05630 0.88 -0.5
576,484 - PGA1_c05630 0.89 +0.9
576,484 - PGA1_c05630 0.89 +0.2
576,506 - +0.4
576,506 - +1.1
576,512 + +0.4
576,538 + +0.0
576,676 + PGA1_c05640 0.16 +0.8
576,714 + PGA1_c05640 0.21 +0.7
576,748 + PGA1_c05640 0.26 +0.7
576,756 - PGA1_c05640 0.28 -1.7
576,756 - PGA1_c05640 0.28 -0.6
576,865 + PGA1_c05640 0.44 -0.9
576,865 + PGA1_c05640 0.44 -1.9
576,873 - PGA1_c05640 0.45 -0.4
576,873 - PGA1_c05640 0.45 -0.4
576,873 - PGA1_c05640 0.45 -0.6
576,873 - PGA1_c05640 0.45 -2.1
577,048 - PGA1_c05640 0.71 -1.0
577,121 - PGA1_c05640 0.82 -0.2
577,121 - PGA1_c05640 0.82 -0.1
577,349 + -0.0
577,357 - -1.3
577,357 - -1.8
577,357 - +0.5
577,359 + -0.2
577,367 - -0.3
577,374 + +0.9
577,467 - -1.8
577,544 + PGA1_c05650 0.19 -1.3
577,571 - PGA1_c05650 0.22 -1.3
577,637 - PGA1_c05650 0.31 -2.1
578,124 + -2.7
578,251 + -0.6
578,251 + +0.7
578,251 + -0.7
578,251 + -0.5
578,259 - +0.1
578,259 - +0.9
578,259 - -0.7
578,259 - -0.7
578,259 - -1.3
578,259 - -0.0
578,291 - +0.0
578,344 + +0.1
578,352 - +0.5
578,354 + +1.2
578,354 + +0.4
578,354 + +0.9
578,354 + +0.3
578,430 - -0.7
578,430 - -0.5
578,430 - +0.5
578,456 + +0.2
578,456 + -0.0
578,489 + PGA1_c05660 0.12 -1.0
578,647 + PGA1_c05660 0.23 +0.1
578,667 + PGA1_c05660 0.25 -1.3
578,668 - PGA1_c05660 0.25 -0.1
578,782 + PGA1_c05660 0.33 -0.3
578,947 + PGA1_c05660 0.44 +0.9
578,952 + PGA1_c05660 0.45 +1.1
578,952 + PGA1_c05660 0.45 -0.0
579,010 - PGA1_c05660 0.49 -2.0
579,014 + PGA1_c05660 0.49 +0.2
579,159 + PGA1_c05660 0.59 +0.5

Or see this region's nucleotide sequence